RNA id: XM_022681109.1


Basic Information

Item Value
RNA id XM_022681109.1
length 1383
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC111195050
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14722983 ~ 14729064 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atggcctcgcccactgGGCTTGTGACCGCCCACGGGAAGAGCGTGCGTGGTTTCTGAGAGAAGCctagagagagcagagagcgTCTCATCAGCTGGAGCTAAATACACCTTTAAGAAGATGGCGGAACAAATTCGTTCCTGTTCTGTTTGTGGAAATAAAACCTCAACATTATATGCTTTGCCCAAGAATGAGGAGCTGCGGACGAAATGGTTGGAGTTTATATTTGGAGCACCGCCCGATTTCTACAACGCGTCCCTAGTCGTGTGTTGTGATCATTTCCACGAGAGTGACTTTACTAACTACGGTGCCTACAGTAGAGGATTTTCTTCGAGGTTGATCTTAAAACCTGGAGTTTTACCGTCACTGCGATCGACCACCACAGACTCACAGACTCGCAAATCACAGACATTGGTGACTCCCCATTCACTTCCGCGCCGCATTCATACCTGCACCCAAACAGACACTCCTAGCCGGACATGTCGGGCTACACAACTTTCTATGAGTACATTAGGCCATCGCTTTAGAAGCAAAGGTACCCAAACAGATTCCCTTGTTGCCACTACGACTATCGCCACAAGTACCCTGGATGCACCATGGGCGCCTGCTAACTCAGCACCCCTCAGGACTGTTTATCCAAGGCCAGCAAAAAGACCTCGGGTATATGAAgaggaagaagatgaagaagaaaaggaggaggataaggaagaggagaaagaggaggagaagaaggaggaggaaaagGAGTATAAGGAGGAGGAAAAGGAGTATAAGGAGGAGTATAAGGAGGAGTGTAAGGAGGAGTATAAGGAGGAGTGTAAGGAGGAGTATAAGGAGGAGTGTAAGGAGGAGTGTAAGGAGGAGTATGAGGAAGAGGATGAATGTCACACCATTACAATTAAACTTGAACCCTATGACTTCCACCTGTGATTCAGCGCAATGTGCCGTAACAAAAATCTTTAAagcttatgaatgtgttttggCATGTCATTTCATCTAAGTGACAATATATTGATGGACATTGACATGTCTTTGCATTAATACTGTGCTTTTAAAAACTAACATTGTGGGTGTATATATTGCCATTTGTCTTAAACAGCGATATGTCTTCAGCTGGACGCAAAGTAAATGGTAATAACTGGTTTTAAATGTCCAGTCTGCACTTGGGTGCCCGTTGCAAAGACCCACAGATGAGGAACGTTTTATCTATTGCATTTTGCCAAGCCATGTAAGCAACATACAACTGTCAGCATACACATTCaacattgtttttatgttttttttgtttgtttgttttttttcccgtGTGCTTTTTTTGGTATTGAAAGTACATGCAAagcacaataataaaaataaaaaaaacgtcttTTCATAAATATCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238651 lncRNA upstream 52305 14670284 ~ 14670678 (+) True G176216
TU238369 lncRNA upstream 186436 14536268 ~ 14536547 (+) True G176010
TU238358 lncRNA upstream 434709 14285302 ~ 14288274 (+) True G176000
TU238354 lncRNA upstream 436010 14284227 ~ 14286973 (+) True G175999
TU238355 lncRNA upstream 436010 14284227 ~ 14286973 (+) False G175999
TU238706 lncRNA downstream 110446 14839510 ~ 14917161 (+) True G176258
TU238831 lncRNA downstream 331565 15060629 ~ 15064133 (+) True G176372
TU238842 lncRNA downstream 348076 15077140 ~ 15077416 (+) True G176383
TU238843 lncRNA downstream 348654 15077718 ~ 15078159 (+) True G176384
TU238853 lncRNA downstream 372413 15101477 ~ 15124591 (+) True G176394
XM_007259445.3 mRNA upstream 216979 14356296 ~ 14506004 (+) True uvrag
XM_015608417.2 mRNA upstream 370795 14340408 ~ 14352188 (+) True dgat2
XM_007259444.3 mRNA upstream 391424 14317405 ~ 14331559 (+) True mogat2
XM_007259441.3 mRNA upstream 441254 14263394 ~ 14281729 (+) True LOC103043274
XM_007259439.3 mRNA upstream 475324 14244212 ~ 14247659 (+) True atg101
XM_015608410.2 mRNA downstream 189795 14918859 ~ 14921856 (+) True LOC103022111
XM_007241731.3 mRNA downstream 752995 15482059 ~ 15487211 (+) True LOC103024204
XM_007241733.3 mRNA downstream 768415 15497479 ~ 15501315 (+) True LOC103024827
XM_022681117.1 mRNA downstream 1065200 15794264 ~ 15939778 (+) True LOC103047397
XM_022681118.1 mRNA downstream 1143188 15872252 ~ 15880621 (+) True LOC111195055
XR_002651440.1 other upstream 854128 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 1037420 13679359 ~ 13685563 (+) True G175900
TU238092 other upstream 1304567 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other upstream 1304567 13411110 ~ 13418416 (+) False LOC111195048
TU238049 other upstream 1395342 13320784 ~ 13327641 (+) False LOC103028411
trnal-uag_3 other downstream 198264 14927328 ~ 14927409 (+) True trnal-uag_3
TU239485 other downstream 2091895 16820959 ~ 16824317 (+) False fam136a
TU239536 other downstream 2313771 17042835 ~ 17046989 (+) True G176882
TU240029 other downstream 3495209 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 3495209 18224273 ~ 18226133 (+) True G177219

Expression Profile