RNA id: XM_022681136.1


Basic Information

Item Value
RNA id XM_022681136.1
length 2773
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC103042004
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 16565749 ~ 16654846 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcccgccgccgccgccgctcgAGGCAGCGCGTGCGATGGGAAGCCCACTGCGGCTGCGGCCGGAGCTCTgctaccatcatcatcatcatcagcatcatcatcctcagcagcagcagcagcatcacagGCACGGGTACCGGGGCAGCAGCCAGGCGAGCGCGAGCCCGAGCGAGCACGCGCCCTCCAGCCATGCGAGCTGCTCGAGACTCCAtccacctcctcctcttcctccacctcctcttcctccaccgctccaccctcctcctcctcctcctctccctcccGCTGCCGCTGCGGAGATGAGCGGCTGCGGCCGGTACAACGGCGGCGTGATGCGCCGCAGCCTGCACGAGTTCGACTCCGAGTCGCAGCCGCTGAGGCCCGCGTGCGCCGCGTCCGCCTGCGCCAGCGACGCCGCGCCGTACCCGGACGTGTCCGTGTCGTCCTCGAAGCCCGACGGCGGCGGGGGAGGCGGCGGAGGCGGCGGAGGGGGAGGCGGCGGCGGATCGTCCGGCCAGAGAGGCTCCAAATCCGGCAAGAAGAAGAACCAGAACATCGGGCAGAAGCTCGGCCACCGGAGGGCGCTGTTCGAGAAGCGCAAACGCCTCAGCGACTACGCGCTCATCTTCGGCATGTTCGGTATCGTGGTGATGGTCATAGAGACCGAGCTGTCCTGGGGGGCTTACGGAAAGGAGTCCCTGTATTCGTTAGCGCTAAAATGCCTGATAAGCCTTTCTACAATCATCCTTCTGGGTTTGATCATCATTTATCACGCCAGAGAGATTCAGCTGTTCATGGTGGACAACGCGGCGGACGACTGGAGGATAGCCATGACCTACGAGCGGATCTTCTTCATCTGCCTGGAGATCCTGGTGTGTGCCATCCACCCCATCCCGGGCAAGTACACCTTCACCTGGACGGCGCGCCTGGCCTTCTACTACACCTCCTCCAAGACGGACGCGGACGTGGACATTATCCTGTCCATCCCCATGTTCCTACGGCTGTACCTGATCGCCCGCGTCATGCTGCTGCACAGCAAACTGTTCACGGACGCTTCCTCACGCAGCATCGGCGCACTCAACAAGATCAACTTCAACACGCGCTTCGTCATGAAGACGCTCATGACCATCTGCCCCGGCACCGTGCTGCTGGTCTTCACCATTTCTCTGTGGATCATCGCCGCCTGGACTGTGAGGGCGTGCGAAAGGTACCACGATAACCAAGACGTAACCAGCAACTTCTTAGGAGCCATGTGGTTGATCTCAATCACTTTTCTAACCATTGGATACGGGGACATGGTCCCCAACACGTACTGTGGCAAAGGGGTGTGTCTCCTCACCGGGATTATGGGCGCCGGGTGCACTGCTTTGGTGGTGGCCGTGGTGGCGAAAAAACTGGAATTAACCAAAGCTGAAAAACATGTACATAACTTCATGATGGACACGCAGCTGACCAAAAGAGTGAAAAACACGGCTGCTAACGTTCTCAGGGAGACCTGGCTCATCTACAAGAACACCAAGCTGGTGAGGAAGATGGACCACGCCAGGGTCAGGAAGCACCAGAGGAAATTCCTCCAAGCCATTCACCAAGCTCGAAAATTAAGAAGTGTAAAAATGGAGCAACGGAAGCTGAATGACCAAGCAAACTCTCTAGTGGACCTCGCTAAGACTCAGAACATCATGTACGACCTGATCTCGGACCTGAACGAGCGCGGCGAGGACACGGAGAAGAGGATCGCGGTTCTGGAGACCAAGCTGGAGACGCTGCTGAGCAACCTGCAGGCTCTGCCGGGCCTCATCAGCCAGCTGATCAGCCAGCAGCACCGCGACTTCCTGGAGGTGCAGCTGCAGCCGTACGAGCGCTCGCAGTCGGTGTCTCGTCGACGGTCGTCCTCCACCGCCCCGCCCACTTCCTCGGAGAGCAGCTAGAGGGCGCTGCCGCCAAGTCACACAGTCTACCGTAGAGCCTTACGGTTTCAATAACGTGTTCTCTGTCCGTGGTTCCGACGAGCGGTGGGGGAAAACGCGGCCGAAGCGGCGTCAAAACTGTCCtcgtacttttttattttacctcaaAACAAGAAACTCGTACAGACGAGCGTTAGCTTTTCTCTGCTGACGGGTTCGCAGAGATGAActcctcctactcctcctcaGTTAACGAAGGGGCTATCATGAGAACGAGCCGGCGGTGGGCGGAGCAGAGCAGCGTCACAACCTCCTTATGGCACAAAATAATACAGTGCCAGAATAGTGCTTCCGTATGGATACTCtgctctcgctcgctctctctctctcaacgcTTATAAAAATGAGGCTGACTACTTCTTCCTTCAACCAGCAGGTGTTGCAtttattataactttttttgttgtttgtttgtttgtttgtttctttaattgttcatttgtttttctttttttttgttctcggCTTTTGTTAAGGAGATGAATTTGTCGAGTGTGTCTCAATCCATGGGTCAACGAAGATTAATATCGAttaatctggcaacccacaAAGCTAACATGGGTACTGCATGAGGGGGGCGTCCCAACTGCGTACGAATTACTTACTAACGCTGACTAATTTTCTAGTAGTTTTACGATTTGAGTACgaagtgtaataaaataaaagtatgaaGTATAGATAAAAGTGTCAAAAAAAAGAAGTTGAATATACTCAAAATACGTAATTGTATACTCAGAATAGGCTGAGTTTTGAGTATGGTTACAGTTATCAGATGGACACTCTTATCTCACAATGCAATGTTATAC

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG:

id description
K04943 KCNN2, KCA2.2; potassium intermediate/small conductance calcium-activated channel subfamily N member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239308 lncRNA upstream 139868 16425670 ~ 16425881 (+) True G176700
TU239300 lncRNA upstream 156341 16335011 ~ 16409408 (+) True G176692
TU239296 lncRNA upstream 236917 16328540 ~ 16328832 (+) True G176688
XR_002651446.1 lncRNA upstream 287468 16272657 ~ 16278281 (+) True LOC111195056
TU239180 lncRNA upstream 378704 16186673 ~ 16187045 (+) True G176602
TU239433 lncRNA downstream 17135 16671981 ~ 16672464 (+) True G176811
TU239438 lncRNA downstream 48000 16702846 ~ 16710537 (+) True G176816
TU239439 lncRNA downstream 48000 16702846 ~ 16710537 (+) False G176816
TU239450 lncRNA downstream 145646 16800492 ~ 16873115 (+) True G176822
TU239482 lncRNA downstream 153475 16808321 ~ 16814735 (+) False G176838
XM_022681131.1 mRNA upstream 160947 16357183 ~ 16404802 (+) True sppl3
XM_007231984.3 mRNA upstream 530185 16022161 ~ 16035564 (+) True LOC103044056
XM_022681120.1 mRNA upstream 557293 15992313 ~ 16008456 (+) True rusc2
XM_022681119.1 mRNA upstream 580377 15943630 ~ 15985372 (+) True LOC103046796
XM_022681117.1 mRNA upstream 625971 15794264 ~ 15939778 (+) True LOC103047397
XM_022681138.1 mRNA downstream 22650 16677496 ~ 16685482 (+) True drg1
XM_007257805.3 mRNA downstream 82066 16736912 ~ 16768304 (+) True slc20a1
XM_007228800.2 mRNA downstream 166089 16820935 ~ 16824328 (+) True fam136a
XM_007228801.3 mRNA downstream 191100 16845946 ~ 16862878 (+) True ggcx
XM_022681152.1 mRNA downstream 332364 16987210 ~ 17002229 (+) True LOC103040133
trnal-uag_3 other upstream 1638340 14927328 ~ 14927409 (+) True trnal-uag_3
XR_002651440.1 other upstream 2696894 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 2880186 13679359 ~ 13685563 (+) True G175900
TU238092 other upstream 3147333 13389326 ~ 13418416 (+) True LOC111195048
TU239485 other downstream 166113 16820959 ~ 16824317 (+) False fam136a
TU239536 other downstream 387989 17042835 ~ 17046989 (+) True G176882
TU240029 other downstream 1569427 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 1569427 18224273 ~ 18226133 (+) True G177219
XR_002651448.1 other downstream 1670027 18324873 ~ 18330489 (+) False LOC103047412

Expression Profile