RNA id: XM_022681138.1


Basic Information

Item Value
RNA id XM_022681138.1
length 1386
RNA type mRNA
GC content 0.50
exon number 8
gene id drg1
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 16677496 ~ 16685482 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTTTTATCTTGTACTACAGATGGCTCGTACTCAAAAAAACAAGGCCACAGCTCATCACCTGGGGCTGCTGAAAGCCCGACTGGCCAAACTCCGGAGAGAGCTCATCACTCCTAAAGGAGGCGGAGGAGGAGGACCTGGAGAAGgTTTTGATGTTGCGAAGACGGGTGATGCGCGTATCGGGTTCGTGGGCTTTCCCTCTGTGGGTAAATCCACGCTGCTGAGTAACCTGGCTGGAGTTTACTCCGAGGTCGCCGCCTACGAGTTCACCACGCTGACCACAGTGCCGGGAGTCATCCGCTACAAAGGAGCCAAAATCCAGCTCCTGGATCTCCCAGGTATCATTGAAGGAGCGAAGGACGGTAAGGGTAGAGGACGTCAGGTCATCGCAGTGGCTCGTACCTGTAATCTGATCCTGATCGTTCTGGACGTGCTGAAACCCCTTGGTCACAAGAAGCTGATCGAGCATGAGCTGGAGGGCTTCGGCATCCGCCTCAACAAGCAGCCCCCCAACATCGGCTTCAAGAAGAAGGACAAAGGAGGCATTAACTTCACTGCCACGTGTGCTCAGAGTGAGCTGGACGCTGAAACGGTGAAGAGCATTCTGGCCGAGTACAAAATCCACAACGCTGACATCACCCTGCGGAGCGACTCTACAGCTGATGACCTCATAGACGTGGTGGAGGGAAACAGAGTTTACATCCCCTGCATTTACGTCCTCAACAAAATCGACCAGATCTCCATCGAGGAGCTCGACGTCATCTACAAAGTCCCTCACTGCGTGCCGATCTCCGCCCACCACCGCTGGAACTTCGACGACCTGCTGGAGAAGATCTGGGACTATCTGCACCTCGTGCGCATttttggaaaaacctcactccaactcccataattcacctggcctcctttacaagataacacctcacagcttatacaggtACAGCTGTTCCCAGTCCTCTAACCTGTTGCTGTTCCTGTCCGCAGTGCTCTGGTGTGGGGTGCCTCCGTTAAACACAACCCTCAGAAGGTGGGGAAAGATCACGTGATGGAGGACGAAGACGTCATTCAGCTGGTGAAGAAATAAACTGACTCTGTTCCAGCTGTGCATGAAGGACCTGCTCTCTTCACcgagctttcagacttttccAACGGCCCCACCATACACTATCCACGATGACGTCATCTTACTGTGGCTCTctgatcattatttttatttttggacatGGTATATATGAATGTTAATGCGTTTCCCTATTCAGCACATGAACACATGAAGCCACATATGGATAGTTAAAAAAAGgcgctgttaaaaaaaatatacaataaaagaaaattaaacacCCAATTGTGTCTATAGATTTAAATAAAAGTCTAAAATAAAGCATTA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239433 lncRNA upstream 5032 16671981 ~ 16672464 (+) True G176811
TU239308 lncRNA upstream 251615 16425670 ~ 16425881 (+) True G176700
TU239300 lncRNA upstream 268088 16335011 ~ 16409408 (+) True G176692
TU239296 lncRNA upstream 348664 16328540 ~ 16328832 (+) True G176688
XR_002651446.1 lncRNA upstream 399215 16272657 ~ 16278281 (+) True LOC111195056
TU239438 lncRNA downstream 17364 16702846 ~ 16710537 (+) True G176816
TU239439 lncRNA downstream 17364 16702846 ~ 16710537 (+) False G176816
TU239450 lncRNA downstream 115010 16800492 ~ 16873115 (+) True G176822
TU239482 lncRNA downstream 122839 16808321 ~ 16814735 (+) False G176838
TU239477 lncRNA downstream 123037 16808519 ~ 16815232 (+) False G176838
XM_022681136.1 mRNA upstream 22650 16565749 ~ 16654846 (+) True LOC103042004
XM_022681131.1 mRNA upstream 272694 16357183 ~ 16404802 (+) True sppl3
XM_007231984.3 mRNA upstream 641932 16022161 ~ 16035564 (+) True LOC103044056
XM_022681120.1 mRNA upstream 669040 15992313 ~ 16008456 (+) True rusc2
XM_022681119.1 mRNA upstream 692124 15943630 ~ 15985372 (+) True LOC103046796
XM_007257805.3 mRNA downstream 51430 16736912 ~ 16768304 (+) True slc20a1
XM_007228800.2 mRNA downstream 135453 16820935 ~ 16824328 (+) True fam136a
XM_007228801.3 mRNA downstream 160464 16845946 ~ 16862878 (+) True ggcx
XM_022681152.1 mRNA downstream 301728 16987210 ~ 17002229 (+) True LOC103040133
XM_007228808.3 mRNA downstream 301728 16987210 ~ 17002229 (+) False LOC103040133
trnal-uag_3 other upstream 1750087 14927328 ~ 14927409 (+) True trnal-uag_3
XR_002651440.1 other upstream 2808641 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 2991933 13679359 ~ 13685563 (+) True G175900
TU238092 other upstream 3259080 13389326 ~ 13418416 (+) True LOC111195048
TU239485 other downstream 135477 16820959 ~ 16824317 (+) False fam136a
TU239536 other downstream 357353 17042835 ~ 17046989 (+) True G176882
TU240029 other downstream 1538791 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 1538791 18224273 ~ 18226133 (+) True G177219
XR_002651448.1 other downstream 1639391 18324873 ~ 18330489 (+) False LOC103047412

Expression Profile