RNA id: XM_022681166.1


Basic Information

Item Value
RNA id XM_022681166.1
length 3319
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC103021760
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18349905 ~ 18388403 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGCGGTGCTGTCCGGCTGTCTGCTGGTCGTGGTGGGTGTGTTGGGGGTGATGTCGGAACCCCCGGCCCCCCGGATCCAGCTGCGTCTGGCCGGGGATAAGCGTAAACACTATGAGGGCCGGGTGGAGGTGCTGTATAATAACGAGTGGGGAACGGTGTGCGACGACGACTTCGACATGTCCGCTGCCCACGTGGTCTGCAGGGAGCTCGGGTACCTGGGAGCCGTGTCCTGGTCTCCCTCTGCCAAATTCGGAAAAGGAGAAGGGCGGATATGGCTGGATAACGTCCACTGCACGGGCAGGGAGACGTCTCTAGCTGACTGTCCGTCAAACGGCTTGGGCGTGTCCGACTGCAGACACTCTGAGGATGTGGGTGTGGTCTGCACCCAGAAACGAATCCCGGGCTTCCAGTTCATCAGCAGCACCAGCAACGACGTGGAGACTCTGGACGTTCGGGTGGAGGATGTTCGTATCCGGGCGACGTATTCCCAGCGTAAACGTGTTCCCATCACAGAGGGCTTTGTGGAGCTGAAGGATGGTGGGAAATGGAGGCAGATTTGTGACGAGGATTGGAACATGATGAACAGCAGGGTTGTGTGCGGGATGTACGGCTTTCCTGGAGTCAAGGGCTTCAACACCAGAGCCTACAAGCTGCTGTCCCAGCGCAGGAAGAAGAACTACTGGGGGTACTCGGTGAACTGCACGGGGAACGAGGCGCACCTGTCCTCCTGCAGGATGGGGAAGGCAGTGAAGCTGGTGGGGAACAGCACCTGTGTGAAGGGGATGCCCGTGGTGGTCAGCTGTGTCCCGGGACGAGCTTTCGCCCCCACACACTCCGCCGGCTTCAGGAAGGCTTACAGACctgagcaacCCCTGGTGCGTCTGCGGGGCGGGGCTAACGTGGGAGAGGGGCGGGTGGAGGTGCTGAAGAACGGCGTGTGGGGGACGGTGTGTGATGATAACTGGGACCTGAGGGCCGCTACGGTGGTGTGCAGAGAACTGGGCTTCGGCTCGGCCAAGGAGGCGCTGACCGGAGCTCGAATGGGCCAGGGAATGGGTTCGGTGCATATGAACGAGGTGGAGTGTTCCGGGTTCGAGAAGTCGGTGACGGAGTGCTTCTTTAACAAAGAGGCTCTGGGCTGCAGTCACGAGGAGGACGCGGCGGTCCGCTGCAACGTTCCGGCCATGGGCTTCCATAACCGGCTGCGTCTGGCTGGGGGCCGGAACCCGTACGAGGGCCGGGTGGAGGTTCTGAACGAGAGGAACGGGTCTCTGGTCTGGGGGACGGTGTGCAGCGAGAGCTGGGGGATAATGGAGGCCATGGTGGTCTGCAGACAGCTGGGACTGGGATTCGCCAGCCATTCCTTCCAGgagACGTGGTACTGGCCCGGTGATGTCAGTGCGGACGGGGTGGTGATGAGCGGGGTCCGGTGTTCTGGTACTGAGATGAGTCTGTCTCAGTGTCTCCATCACGGTAAACACGTCAGCTGCCCTAAAGGAGGCGGACGCTTCGCTGCGGGGGTCTCCTGCTCTCACACTGCTCCGGACCTGGTGCTGAACGCAGAGGTGGTTGAACACACCACCTACCTGGAGGACCGCCCCATGTACGCGCTGCAGTGCGCACATGAGGAGAACTGCCTGTCCAGCACGGCCAACGCCGCCGACCACGCCTCCTACCGACGCCTTCTCCGCTTCTCCTCCCAGATCCACAACAACGGCCAGTCCGACTTCAGACCCCGAGCCGGACAGAACTCCTGGATCTGGCACGAGTGCCACAGGCACTACCACAGTATGGAGGTGTTCACTCACTACGATCTTCTGAGTCTGAACGGCACTAAAGTGGCTGAAGGTCACAAGGCCAGCTTCTGCCTGGAGGATACGGAGTGTGATGAAGGTATCCAGAAGAGATACGCCTGTGCGAACTTCGGTCAGCAGGGAATCACTGTGGGCTGCTGGGACACTTACAGACATGACATCGACTGCCAGTGGATCGACATCACCGACATTAAACCAGGAAATTACATCTTCCAGGTCGTTATTAACCCCAATTATGAAGTAGCAGAGTCTGATTACACCAACAACATCATGAGGTGTAAATGCCGCTACGATGGACATCGGATATGGACGTATAACTGTCATATAGGTGGTTCTCGGAGCTCAGATATGGATGAGTTTACAGGAATACTGACCAATCAGCTGCAGCGCAGGTAGAGCGGACGCACGAGTTATACCAAGACCAACCACTATGGGGGAGTGTTAGCCATGCTGCAGTGAACGACTCGTACCTCGCACCAATCCCAGAACTGTCTACAGTCTACGATCCATCGCTGGAGCTGGAACTGAGGAGCTCATCCTCTACGTCTTTTACATCATGAGAAAACCTCTTaactatgtttttttacacaagttcCATTAGGGGTAAATTTATGCTTCTGCGTCAGACCTGCAGTAGCCTACAGGTAGCTGTGTACTCTGCACCATAGCGAACACCATAGCCTAATGTACACCTTTCCaacactgtgattggtccacttAAGCATTGTGTGAAAGTCAACCCAACTGGCATAGAAAATGCATTAccaactaggcctgtcacgataattacaatATCGATATATCGTATTATATATCGACACAAccacaattattttactttgcGAGCAGAAtcaaattaaccaattaacatGAATAAACCTCTATTTTGACTTTTTAACAgtgattttattctcttcatggtttatttttagtataatCGTTAATGGTTAAAAAATCATTGCACTTTAAAAGTAATACCAATCtaaatgcattataccaaagcACAGTTACAATATGATTATATCATTATACCataaaatgatcttaaaatgacaataatattgtctatcgcaaaaaaattgtaaactatattttgtgcaaaaaagtttttagcattttatcaTGACAGGCATATCGCCACCTAGTGTTTCGGAGGTGTAATTGCAAGTGTAATGCTCACAGTGGTGTGGGAGGCTCGCACAGAATACTACGAAGACTCTTCGTAGATTTGATGTAGAAGCATAAACTGGCCTTAAGAGATGTTACCTTTATATGGTAATTAGGGTTGTTGTGGTATACTGGTCTTAGATACagtgatcaagcataacattatgaccacctccttgtttctacacccattatacattttttttattttttcagatccACTGCCGAAAAAAGAACAAGAGTTCTTTAGGTTTCGTtcccacagcagtgctgctggagtttttaaacactgtgtttacttactcactgtcctccactctattacacactcctacct

Function

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0032332 positive regulation of chondrocyte differentiation biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0030199 collagen fibril organization biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001935 endothelial cell proliferation biological_process
GO:0001666 response to hypoxia biological_process
GO:0043542 endothelial cell migration biological_process
GO:0005604 basement membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0016020 membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240507 lncRNA downstream 1251 18348298 ~ 18348654 (-) True G177559
TU240503 lncRNA downstream 11073 18338544 ~ 18338832 (-) True G177555
TU240489 lncRNA downstream 11439 18263803 ~ 18338466 (-) True G177546
TU240499 lncRNA downstream 21726 18324755 ~ 18328179 (-) True G177551
TU240488 lncRNA downstream 82398 18262603 ~ 18267507 (-) True G177545
TU240523 lncRNA upstream 115995 18504398 ~ 18531635 (-) False nsd3
TU240538 lncRNA upstream 146482 18534885 ~ 18537687 (-) True G177584
TU240543 lncRNA upstream 160607 18549010 ~ 18550867 (-) True G177589
TU240552 lncRNA upstream 172949 18561352 ~ 18565313 (-) True G177596
TU240560 lncRNA upstream 226489 18614892 ~ 18615995 (-) False LOC111195059
XM_007254943.3 mRNA downstream 32343 18307853 ~ 18317562 (-) True LOC103046908
XM_007254944.3 mRNA downstream 32344 18307853 ~ 18317561 (-) False LOC103046908
XM_007254941.3 mRNA downstream 47863 18257392 ~ 18302042 (-) False LOC103046193
XM_007254940.3 mRNA downstream 47863 18257392 ~ 18302042 (-) True LOC103046193
XM_007254942.3 mRNA downstream 47865 18257392 ~ 18302040 (-) False LOC103046193
XM_022681172.1 mRNA upstream 16600 18405003 ~ 18449203 (-) False tacc1
XM_022681171.1 mRNA upstream 16600 18405003 ~ 18435807 (-) True tacc1
XM_007254951.3 mRNA upstream 16600 18405003 ~ 18435805 (-) False tacc1
XM_022681167.1 mRNA upstream 70601 18459004 ~ 18482114 (-) True LOC103023096
XM_022681169.1 mRNA upstream 70601 18459004 ~ 18482113 (-) False LOC103023096
TU240457 other downstream 175380 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 2559261 15780555 ~ 15790644 (-) False stoml2
TU238972 other downstream 2784442 15529393 ~ 15565463 (-) False LOC111194989
TU240520 other upstream 9179 18397582 ~ 18403008 (-) True G177568
TU240722 other upstream 702743 19091146 ~ 19092146 (-) True G177704
XR_002651453.1 other upstream 731383 19119786 ~ 19128122 (-) False LOC103035567
TU241386 other upstream 2903119 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 3545116 21933519 ~ 21933831 (-) True G178267

Expression Profile