RNA id: XM_022681173.1


Basic Information

Item Value
RNA id XM_022681173.1
length 2636
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC103044763
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18560339 ~ 18563776 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAAAGCTGGTAAATGTCTGAGATCATGAGATGGAAACAGTGCTGCTAACCCCAGGCTGAAGCAGGGAGGAGGGGATTGAAACACAGCCATTAAGCACACTTCCTTTGTAGAGAAAAGGAAACCACCCCTCTCTAACACATTAATCTGCTTCCAGTAAAGAGCAGCAGGAGACCCAGTGTGAGATACTCCGGGCACATCTCACCGCACTGCCAGGATGAGGCAACTGTGCCGCTTCGTGTTGCTGTGTCTGGCTGTCATGGCTTCACTACATGACATATCAGAAGGGAGGAGAggatcatcatcttcatcatctagCAAAGGAACATCTTCATCATCTAGCAAAGGAACATCTTCCTCGTCTAGTAAAGGAACATCTTCATCGTCTAGCAAAGGAACATCTACGTCTAGTAAAGGAACATCATCGTCTAGTAAAGGGACAACATCTTCCAAGGGAACAAGCACAAAGGTCAACTATCCCAGGCAACCTGCCGGTGGGAGTTATCCAGCTGGAGGACAGTATCCAGGACGTGGAGGCTCAAACCCTGGTGGATACCCCAATCAGAACCCTGCTGGTGGGAGTTATCCAGCTGGAGGCCAGTATCCAGGACGTGGAGGCTCAAACCCTGGTGGATACCCCAATCAGAACCCTGCTGGTGGGAGTTATCCAGCTGGAGGCCAGTATCCAGGACATGGAGGCTCAAACCCTGGTGGATACCCCAATCAGAACCCTGCCGGTGGGAGTTATCCAGCTGGAGGCCAGTATCCAGGACATGGAGGCTCAAACCCTGGTGGATACCCCAATCAGTACCCTGCTGGTGGTAGTTATCCAGCTGGAGGCCAGTATCCAGGACGTGGAGGCTCAAACCCTGGAGGATACCCCAATCAAAACCCTGCTGGTGGGAGTTATCCAGCGGGAGGCCAGTATCCTGGGCAAGGGGGCAGTAGTCCTGGAAGCTATCCCAACCAGTACCCTGCTGCTGGTGGCTACCCAAATCAGTCTCCAGGAAGAGGAGGTGTAAATCCAGGAGGGTATCCCAACCAGTACCCTGCAGGAGGAGGTTACCCAGCCGGTGGTCAGTACCCTGCAAGAGGTGGCATAAATCCAGGAGGGTATCCCAATCAGTACCCTGCAGGGGGAGGTTATCCAGCCGGTGGTCAGTACCCTGCAAGAGGTGGCATAAATCCAGGAGGGTATCCCAACCAGTACCCTGCAGGGGGAGGTTACCCAGCCGGTGGTCAGTACCCTGCAAGAGGTGGCGTAAATCCAGGAGGGTCTTATCCCAACTGGAACCCCAACAACAAGATCCTTAGTCCTCGCTATGGGGGAGGGTTTGGAGGCACTGGACACGGAATCGGTGGTTCTCCCTTTTCACGGTCAGTGCATAACATGGGTTACGGCCCCTCACCAAAGTCCAAAGGTTTTGCAAAAAAGGCAATGGTAGCAGCTGGAGTTGGAGCGGTTGCAGGGATGGCAGTAGGTTATGGCCTGGGACGCTTCCCAAAGCCCCACTTCAGCGTCAGCAGTCCACAAGAGGAGCGCTACTACAACCACTACATGTACAAGCGCTATGGCACCAAATCTACCGACAAGAACGATTACGGTCGAGACTATGTCTACAAGCCACCACCTGAAGCACAGAGTTATGAGAAATACATGGACACTTGCATGAACAGAACTGACCTTCTACAAGATCAGGACAAGAAGACCAGAAACTTTGAGAGAAAGATCCCTCAATCTCCTGCTCGCACTCTTAATACCAGCATTCTTCAGAGACCTGACCCTGCAGGTAGCAGCATTGGGAACGTCCAAAAAGATGAATCTATTTCTGGATCTTCTGCACTTGATACCGGCAGCCTTGATAGACCTGACTCTGTGGGCGGTAGTGTTAACAGCCCCCAGAAAGACAGCGAATCTCCTGCTCCTGCTAACGGCACTCTTGATAGTGTTCTTGTGCCTGCTGGACTTCAGGAAAGTGATGACGACACGGTGAGCATCACAGAGATTGGGTATCCTGCACTCATCCTGCAGATGAAGGCTCGTAAGTGTGTGCAGTTGTACATGACGTATTCCGAAGGCTTCCTTCAAAAGCAGACAGCCCCAAAAGAGTCATCTGCCTCAAGTCCACGCCTACTGCTGAGCACTCTCATCATATCCATCAGCAGCGCCCTCTTGCTGCAGTAAAAGCAAGGACATGGCTTGAGCTTCATTCACACAGCATGTTGTCCCaaaatgtttctaaattaaaagtaaaaaaaaattatctgtgATCTCATTGCCACACATACACTTTTAAAGAGATGAAAAGCATTTTTTGTGGAGAAAACCACGTAAAACCATTAGCATTTGTGAAATGTACGGATATTAAAAAAGATCTAATCTTTTTCCGAATCAATTGGTTCATTTGATTAAATCTCCCAAAAGCCCCACTTTTCATCAATAAGTTTCTCACTAAATCTGATTAAATCTTCTACtaaatctttttaatgtgacccatATCTGGTATTGATCTGAACAGTCTGCACGGTGTAACCAATGCAGCATTGAGTAAGGCTtcacttttacattacattacattacattacattacatttcatttggcagacgcttttgtccaaagcgacttacaataatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240113 lncRNA upstream 44419 18513564 ~ 18515921 (+) True G177281
TU240126 lncRNA upstream 47243 18507224 ~ 18513097 (+) False G177289
TU240125 lncRNA upstream 47243 18511740 ~ 18513097 (+) False G177289
TU240114 lncRNA upstream 65553 18493006 ~ 18494787 (+) True G177282
TU240111 lncRNA upstream 69734 18485707 ~ 18490606 (+) True G177279
TU240123 lncRNA downstream 1803 18565579 ~ 18568326 (+) True G177289
TU240150 lncRNA downstream 40768 18604544 ~ 18609129 (+) True G177298
TU240151 lncRNA downstream 40768 18604544 ~ 18605074 (+) False G177298
TU240152 lncRNA downstream 40768 18604544 ~ 18609129 (+) False G177298
TU240154 lncRNA downstream 81851 18645627 ~ 18648103 (+) True G177300
XM_022680716.1 mRNA upstream 1896 18540114 ~ 18558444 (+) True LOC103024155
XM_007254956.3 mRNA upstream 23292 18524865 ~ 18537048 (+) True letm2
XM_007254946.3 mRNA upstream 213010 18338861 ~ 18347330 (+) True LOC103047729
XM_007254947.3 mRNA upstream 223159 18331681 ~ 18337181 (+) False LOC103021446
XM_007254966.3 mRNA downstream 75142 18638918 ~ 18645170 (+) True LOC103027413
XM_007255028.3 mRNA downstream 127156 18690932 ~ 18738736 (+) True LOC103045675
XM_007254967.3 mRNA downstream 228593 18792369 ~ 18806551 (+) True anxa4
XM_007254968.3 mRNA downstream 254136 18817912 ~ 18829242 (+) True LOC103028061
XM_007255030.2 mRNA downstream 272040 18835816 ~ 18840424 (+) True LOC103046295
TU240134 other upstream 16343 18539898 ~ 18543997 (+) False LOC103024155
XR_002651448.1 other upstream 229851 18324873 ~ 18330489 (+) False LOC103047412
TU240029 other upstream 334207 18224273 ~ 18226133 (+) False G177219
TU240030 other upstream 334207 18224273 ~ 18226133 (+) True G177219
TU239536 other upstream 1513351 17042835 ~ 17046989 (+) True G176882
TU240867 other downstream 1156525 19720301 ~ 19722389 (+) False LOC111194983
XR_002651455.1 other downstream 1187166 19750942 ~ 19775791 (+) False LOC103042206
TU241050 other downstream 1525485 20089261 ~ 20093862 (+) False LOC103043854
TU241070 other downstream 1575046 20138822 ~ 20139564 (+) True G177950
TU241506 other downstream 3685368 22249144 ~ 22301065 (+) False LOC103046694

Expression Profile