RNA id: XM_022681190.1


Basic Information

Item Value
RNA id XM_022681190.1
length 1406
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC103047211
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19099862 ~ 19106136 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCCTGCAGTACGGGTATTTAACCCTGCGGGACGGTGCTGATGGTCAGTTACACTGGGAACACTGGgagcatgctgctgctgctggtcctGACCCTGATCACCCTCTCACTCTCCCACACCGATTTCTGTTATGATGACGGTCAGTGTGatccgTACGCGTGGGGAGATTACTACCCGTCCTGTCACCCACTGCTGGACGCCCATCATTCCCCGATtgatctcgggcagcaggagatCCGAGATGGTGGTCTGGACGCACTGGAACTTTCTGGCTTCAACAGCACCCCCACCGGCCGCTGGAGACTCACCAACCAGGGTCACTCAGtggtgttgGAGGTGGGTGGTGGTCTGTCGGTGAGTGGTGGAGGTCTTCCTGGATCGTATCGGACCGTCCAGCTGCATTTCCACTGGGGCAGCGCGTCCAGCAATGGCTCCgaacacacactcctccagcAGCGGTTCCCTATGGAGATGCACATCATCAGTGTGAAGTCCACCTACCCAAACCTGACCGCTGCTCTGGACGACCCGACCGGCCTGGCCGTGCTTGCTGTCTTTATTGATCTTGTTTATGTCGACAATGACAACTTCCTGCAGATCTCCAGTGCCCTGCCCTTTATCACCTACAAAGGTCAGGAGAAGTCCATCCGGCCGTTCCCCCTCCTCACTCTGCTGCCCCACGCCAACCTCTCTCAGTATTATCGTTACCATGGCAGCCTGACCACGCCCCCCTGCTCACAGGCTGTCCTGTGGACCGTGTATGAGGTGCCCATTACCATCTCCTGGCAACAGTTTGAGCTGTTTATCAGTGGAATCTACTCCACCCAGGAGGGGGCGGAGCATGCGGTTCTCCTGCAGAACAACTTCAGGCATATTCACCCCGCCTACAGCACCGTCTACGCCTCCAGACACGCCCACCTGCTCTCCAGCACCCCCCAGCAGACCACCCTCACCCTTaccctcaccctcaccctcaccaCCCTCATACCAGCACTCGGCCTGATTAGCTGACCGGATCTCAGCGGGGGAGAGGGCAGGGCTGTGAGTGAAGTGGACACGCTTCTTTGGCAGCAGGTGTTTGGGAGGAACTGTGTataatttactgttaaaaaaaaaaaatggattcaGAGGGTTTTATCACCAGCTTGCCCCGCCCTCCTTCACCCACATCCGCCCAACGTCTGGCAACAGCGCCACCCACTGTTTACTTCTGGTGTTATTAAGCGTAGTTAAGTTGTTTATCTGTTTACCCTCTACTGGAGAAACAGGCCGAGACATAGCAGGTCAAAGGTCAGACCTGGAGCAGAGAACCCCCAGAACATTCTGCACCCCAAGACTAGATAtacttttattcatttcaaaataaaagtcttttctaaaaaaaacattatttgtgATAAACTGA

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240704 lncRNA downstream 21528 19075375 ~ 19078334 (-) False G177688
TU240705 lncRNA downstream 21528 19075375 ~ 19078334 (-) True G177688
XR_002651451.1 lncRNA downstream 21886 19077571 ~ 19077976 (-) True LOC103033103
XR_002651452.1 lncRNA downstream 22946 19075247 ~ 19076916 (-) True LOC111195061
TU240688 lncRNA downstream 112447 18983812 ~ 18987415 (-) True G177678
TU240700 lncRNA upstream 4025 19110161 ~ 19159146 (-) True G177685
TU240751 lncRNA upstream 38142 19144278 ~ 19147039 (-) True G177717
TU240765 lncRNA upstream 55481 19161617 ~ 19164767 (-) True G177728
TU240768 lncRNA upstream 59954 19166090 ~ 19168529 (-) True G177729
TU240787 lncRNA upstream 94413 19200549 ~ 19202732 (-) True G177742
XM_007254986.3 mRNA downstream 27333 19063550 ~ 19072529 (-) True rhof
XM_007254980.3 mRNA downstream 43610 19052991 ~ 19056252 (-) True LOC103031534
XM_022681189.1 mRNA downstream 51526 19038310 ~ 19048336 (-) True LOC103030174
XM_022681187.1 mRNA downstream 94001 18994874 ~ 19005861 (-) False LOC103029848
XM_007254974.3 mRNA downstream 94002 18994874 ~ 19005860 (-) True LOC103029848
XM_007254987.3 mRNA upstream 5898 19112034 ~ 19121657 (-) True dgcr2
XM_015607301.2 mRNA upstream 16518 19122654 ~ 19128123 (-) False LOC103035567
XM_007254995.3 mRNA upstream 16518 19122654 ~ 19128122 (-) True LOC103035567
XM_007254992.3 mRNA upstream 23071 19129207 ~ 19133378 (-) True dusp11
XM_022681191.1 mRNA upstream 51966 19158102 ~ 19162507 (-) True LOC103036397
TU240722 other downstream 7716 19091146 ~ 19092146 (-) True G177704
TU240520 other downstream 696854 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 925337 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 3309218 15780555 ~ 15790644 (-) False stoml2
TU238985 other downstream 3534399 15530986 ~ 15565463 (-) False LOC111194989
XR_002651453.1 other upstream 13650 19119786 ~ 19128122 (-) False LOC103035567
TU241386 other upstream 2185386 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 2827383 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 3349361 22455497 ~ 22456779 (-) True G178426
TU241723 other upstream 3395182 22501318 ~ 22506501 (-) True LOC103023660

Expression Profile