RNA id: XM_022681240.1


Basic Information

Item Value
RNA id XM_022681240.1
length 1963
RNA type mRNA
GC content 0.48
exon number 16
gene id katnal2
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20408361 ~ 20420818 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggatCTGACTCTGGGTCAGGTTTGCCAGCAGAGGGGACCAATGACAGAAGTGCTGGGACACAGGATCATCTGCCTGGAACAACACTAGTGTTAGTTGGCTGGCaacttgtgtgtgtgagagagagagtgagtgtgagagagagagtgtgtgtgtgtgtgtgtgtggctgttgaGTTGCAGCAGCTCCACACAGCGAGCTACAGCATGGAATTGTCATATCAAGCCATAAAAACTGCAAACCAGGCCAGAGAAGCGGATGAATTGAGAACagaaacaagaagaagaaacttGCTTGTGttaatttatcattatttgatGGAGGAAGgGTATATGGACGCTGCTAGCTGCCTGGAGCAGGACACTAATTTTGGATTGCGGCGTTTTGAAGTGTGTGACAATATTGACTTGGACACTATTCTAATGGAGTatgaaagttattattttatcaaatttcAGAAATATCCCAAACTAACAAAGAAACTGCCAGAACAAGGGGAGACCAGAGCAGTGAGAAGCTGTGGTAAAAAGAGGACCCCATGCACAACCCAGACACTGCCAAGAATCGCCTGCGTCCAGCGGCCCCAGTCCAGGAACAGTATTAAAAAGCCAGACTCTAAAGCAGCAGTGAAAGACTGCAGTAAATCTAACAGCTTTCAGGAGAACGGAGGAGGGTACGTGCGAGAGAGGAGCGGGTTTGGCCTGAATGTGTCTCCCGTTATCAGGAATGGAGGTGGTGAGGGGATGCAGAGGAAGGACACAGTCAAGGGAGCAGTGCATGATACTAATGCAAATGGATTTACCTACAATCTAGATCCTACGGAGCGGCTGCTGAAACCCATTAGCTCCTTCTATTGGATGGATAGTGAAATGAGAGAGCTGGCAGCTGTGATTAGCAGGGATATCTATTTACACAACCCCAACGTGCGCTGGGACGACATTATAGGTCTGGAGGCCGCCAAGCGATTAGTCAAAGAGGCTGTCGTCTACCCCATTAAGtATCCTCAGCTCTTTACAGGCATTCTCTCTCCGTGGAAGGGTTTACTGCTCTACGGACCCCCAGGCACAGGCAAGACAATGCTGGCGAAAGCTGTAGCCACAGAGTGCAACACAACGTTCTTTAACATCTCTGCCTCCAGTATTGTCAGCAAGTGGAGAGGAGACTCTGAGAAGCTGGTTCGGGTTTTGTTTGAGCTGGCCAGATACCATGCCCCATCCACCATCTTTCTGGATGAGCTGGAGTCAGTGATGAGCCAGAGAGGTGTTGGACAAGGAGGTGAACATGAAGGCAGCAGGAGAATGAagactgagctgctggttcagATGGACGGACTGGCACGATCTAAAGATCTGGTGTTTGTGTTGGCTGCCTCAAACCTACCCTGGGAGCTGGACCACGCCATGCTGAGAAGACTGGAGAAGAGGATACTAGTGGGTCTTCCCTCCGACCCAGCCAGAAAAGCAATGATCAATCACTGGCTTCCTCCAGTCAGTAACAACGGTGGAATAGAACTTCGAACTGAGCTAGCCTATGACATTCTTGCCCAGGAAACAGAGGGGTACTCCGGCTCAGATATCAGACTCGTGTGTAAGGAAGCGGCGATGAGGCCTGTCCGGAAGATTTTTGACGCTCTGGAGAATCACAGCGAGGGTCACTGCGACATGTCGTTTATTGAGCTAGAAACGGTGACCACAGCAGATTTCCTGGAGGTGATCGCTCACACCAAACCATCAGCCAGAAACCTGACGGACAGATTCTCGGCCTGGGAGAGGGAGTACGAATCTGTCTGAGCTTACACCATCCTGAACTACACTTATCACACTACAGTTTTTACTGCACACCATGCAAGTTCTTCTCCATGTGATTCATCCATCCTTAGAAATGTTTTCAGTAGCATCATCACAGGCTGTAAACATAACAAACACtgtccaaaaaatataaaaataaaccctttttccattttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241241 lncRNA downstream 9215 20396383 ~ 20399146 (-) True G178069
TU241193 lncRNA downstream 76233 20331217 ~ 20332128 (-) True G178036
TU241187 lncRNA downstream 121019 20287030 ~ 20287342 (-) True G178030
TU241155 lncRNA downstream 150635 20235691 ~ 20257726 (-) True G178014
TU241259 lncRNA upstream 158888 20579704 ~ 20581712 (-) True G178086
TU241264 lncRNA upstream 194986 20615802 ~ 20616011 (-) True G178090
TU241270 lncRNA upstream 296937 20717753 ~ 20718065 (-) True G178096
TU241333 lncRNA upstream 421231 20842047 ~ 20842374 (-) True G178134
TU241365 lncRNA upstream 835833 21256649 ~ 21265014 (-) False G178157
XM_022681236.1 mRNA downstream 180067 20219002 ~ 20228294 (-) False LOC103029139
XM_007260828.2 mRNA downstream 180067 20219002 ~ 20228294 (-) True LOC103029139
XM_022681237.1 mRNA downstream 180238 20219002 ~ 20228123 (-) False LOC103029139
XM_022681228.1 mRNA downstream 190167 20168776 ~ 20218194 (-) True LOC103029774
XM_022681234.1 mRNA downstream 244481 20157825 ~ 20163880 (-) False LOC111195065
XM_007260819.3 mRNA upstream 534 20421350 ~ 20424770 (-) True sigmar1
XM_007260810.2 mRNA upstream 853704 21274520 ~ 21284697 (-) True tmem267
XM_007260808.3 mRNA upstream 876568 21297384 ~ 21312937 (-) False rassf6
XM_007260809.3 mRNA upstream 876568 21297384 ~ 21312937 (-) True rassf6
XM_007254077.3 mRNA upstream 968411 21389227 ~ 21423245 (-) True LOC103045065
XR_002651453.1 other downstream 1280239 19119786 ~ 19128122 (-) False LOC103035567
TU240722 other downstream 1316215 19091146 ~ 19092146 (-) True G177704
TU240520 other downstream 2005353 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 2233836 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 4617717 15780555 ~ 15790644 (-) False stoml2
TU241386 other upstream 870706 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 1512703 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 2034681 22455497 ~ 22456779 (-) True G178426
TU241723 other upstream 2080502 22501318 ~ 22506501 (-) True LOC103023660
trnam-cau_23 other upstream 2109792 22530608 ~ 22530679 (-) True trnam-cau_23

Expression Profile