RNA id: XM_022681242.1


Basic Information

Item Value
RNA id XM_022681242.1
length 3376
RNA type mRNA
GC content 0.52
exon number 16
gene id musk
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21326212 ~ 21369274 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatctgtgagctgatgtatcagaaccgagtctctgcactttcctccgagtgtgctgtgatgctactcagaaaTGCTGGTTCGCTGAAAAGCACCATGGTTCTTATAAGCCTGAACAGAACTGGTTTAAAAACCAGAGTTCTTGTGTTGAAAATGTGCTCTCTGTGACACACAGTGAGGTCAGTTGTCCATGATGTTGAAAAGGAGACTGTTCAGAATGTAAACTATGCTGTTGGGAAAGCTCAGTTTCACAACATCCACAATAAATGCTTACTTCGCTATTTGAGGTCACATACTGCTCACTATTTTTCTTGCTAACGTGTCCTCCTTCATAACGTGATTGATGAAGAGGCAGCTATCTTTGGACACATGAAGTGATTACTTCTGACCACTGTATGTGACTCATATGAAATCTATTGACTTTGAAGACCTAGGTCTAGTACAGGCTAAATATCTGAAGAATGCTATTTGTGCTATTTATGGGCAGTAGTGGgtgtttaatgctgattgatgtctttctttttatttgctcATCCcaacatttttctctctctttttcagctcCTCGCATCACAACCTTACTTGAAACTGTGGATGCCTTGCTGGATCATAATGCAACTTTTATATGCGAGGTGGACTCTTATCCTACAGCAGATATCTCCTGGACGCGCAATAATCACCCCATATGGTATTATGATCCGCGATACATTATCAGAGAAAGCGGCCAAATGTTGATCATTCCCAATGTGAAGGACTCCGACAATGGAGAATACTGCTGCAGTGCCAACAACGGAATCGGAGAGCCAGCTAAAAGCTGTGGGGCTTTGCAGCTGAAGATGAAGCCCCAAATTAAGAGACATCCAACAAATGCCACGTACCTACTGGAGTCCAAGGCAGTGTTGCCGTGTATAACATTAGGATATCCAAAACCTGATATATCCTGGatgaaaaatgatgattttgtAAAGGTTGATAGCCGGATATCGATTTTGGAACTTGGTGCGTTAAAAATTCACAACATTAAGAAAGAGGACGCGGGTCAGTACCGATGTGTGGCGAAAAACAGCTTTGGGATTGCCTTCTCAAAACTGGTCACCCTTGAAGTTCAAGCTCCAGCTAAAATCCTCAAAGTTCCAAAAGAGAAGAAGGTGCAGATTGGAACAGAAGTGTCTCTGGATTGCAACGCCACTGGCAACCCCATCCCCTCCATCACCTGGCTGGAAAATGGCAATACGATCAGCGGAGCGGCGGTGGAGGAGACGCTGGTGGGGGAGGTGATTGTATCCGTGTTGCGGGTGGTGGTTAATAAACCGGCTCTGTACACCTGCCAGGCCACCAACCAGCACAGCGGAGGAGCTAACACCGTCAAAGCTACGGCCAAGATCACTGTCTCAGAATGGAGGCTGTATAAAAGCAGTGCTGGATACTGCAGTACGTACCGTGGGGAGGTGTGTGATGGAGCACTGAGACAGAATGCACTcgtcttttttaacttttcccTGCCAGATCCGGAGAATGCTCAGGAGCTCCTGGCCCGGGCCAGCTGGTCTGAGCTGGATTGGGCGAGTCCGTTGTGCCGTCCGGCCGCTCGGTCTCTGCTCTGCCACAACGCCTTCCAGGACTGCAGCCCCTCAGGCCTGGGACCCTCCCCTAAACCGCTATGCAGGGAGCACTGCGTGGCGGTGAAGGAGCTGTACTGCTATAAAGAGTGGAGAGCCAGTGAAGAGCGCAGTCACAGGGGAGTCATGTCTCCAGGTCTGAGCATCGCTCTGACGGACTGCAGAAAACTGCCCAGCCTGCAGGCAGATCCAGACTCCTGCACTGCGGTAGATTATGTGGGGATGAAGAAAGACCAGATTACAACAACCTGCTACAACAACAGAGGGCGGTTTTACCAAGGAGCACTCAATGTCACAGCGTCTGGTATTCCCTGTCAGCGCTGGGACCAGCAGgATCCTCATCCTCACAGACTTCCTGTGGATGTCATCCCCGAGCTCAGCAATGCAGAGAACTACTGCCGCAATCCCGGGGGAGAGAGCGACAGGCCGTGGTGCTACACCAGCAGTCCCAGGGTACGCTGGGAATACTGCCTGGTCCCCAAATGTGGAGAAGcAGTAACCATTGTGAGAGCAGCATCTGCTCCTAAACCGCCTCCATCAAACCCCATCGCTGCCGTCTCCACTGCCTACTACATGAATGTCATCATATTCATCATCGCGGGCTTTGCGGGTGTGGCCTTCCTCACCATACTCATCCTCATGTGTCACAAGAGGAGGAAAACGTGGAAACGTCGGAGAAGCAGAGTCATGAAGACCCCCACCCTCACCGCCCTTCCTTCAGAACTGCTGCTGGACAGACTGCACCCCAACCCCATGTACCAGCGTCTGCCCCTGCTGCTCAACTCCAAGCTGCTGACGCTGGAGTACCCCCGCAACAACATCGAATACGTGCGGGACATCGGAGAGGGAGCCTTCGGCAGGGTGTTTCAGGCAAGAGCTCCCGGTCTGTTACCACACGAACCCTTCACCATGGTTGCGGTGAAGATGCTAAAGGAAGAAGCCTCAGCCGACATGCAGAACGACTTCCAGAGAGAAGCTGCACTCATGGCCGAGTTTGATCACCCAAACATTGTCCGTCTTCTGGGGGTGTGTGCTGTTGGGAAACCCATGTGTCTGATGTTCGAGTACATGGCCCATGGGGATCTGAACGAGTTTCTGAGGAGGCGTTCTCCGGCTCAGCAGCGTAGCCTGAGTCAGGGAAGCCTGACGGACCAGAGTTTCGCCTCCGAATCAGATCCCACACCTCTTAGCTGCTTAGAGAAGCTCTCCATGTCCAAGCAGGTGGCAGCAGGCATGGCCTACCTGTCCGAGCGGAAGTTCGTCCACCGGGACTTGGCTACACGCAACTGCCTGGTGGGCGAAGACCTTGTGGTGAAGATTGCTGATTTTGGGCTGTCGCGGAACATCTACGCTGCTGACTACTACAAGGCCAGCGAAAACGACGCCATCCCCATACGGTGGATGCCTCCAGAGTCCATCTTCTACAACCGCTACACCAGCGAGTCGGACGTCTGGGCGTACGGAGTGGTACTGTGGGAGATTTTCTCCCACGGCATGCAACCCTACTATGGCATGGCCCACGAGGAGGTCATCTACTACGTCAGGGATGGCCACGTTCTGGCCTGCCCTGAAAACTGCCCACTGGAACTCTACAACCTGATGCGCCTGTGCTGGAGCCGCCACCCCAACGACCGGCCCAGCTTCGCCAGCATCCACCGCATACTGGACCGAATGCACAACCAGATGCTGCACTCCAGCATGGCCTTAAACGATCCAGTGaatgcatgaataaaaaaaaaaaaaaaaacatagacacAAC

Function

GO:

id name namespace
GO:0051124 synaptic growth at neuromuscular junction biological_process
GO:0071340 skeletal muscle acetylcholine-gated channel clustering biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0006468 protein phosphorylation biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05129 MUSK; muscle, skeletal, receptor tyrosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241284 lncRNA upstream 71693 21237139 ~ 21264984 (+) True G178105
TU241287 lncRNA upstream 378194 20931781 ~ 20958483 (+) True G178108
TU241271 lncRNA upstream 615286 20721073 ~ 20721391 (+) True G178097
TU241265 lncRNA upstream 711649 20624779 ~ 20625028 (+) True G178091
TU241262 lncRNA upstream 733888 20602451 ~ 20602789 (+) True G178088
TU241422 lncRNA downstream 171303 21540577 ~ 21546968 (+) True G178202
TU241453 lncRNA downstream 330159 21699433 ~ 21699633 (+) True G178233
TU241476 lncRNA downstream 603440 21972714 ~ 21973034 (+) True G178254
TU241500 lncRNA downstream 730045 22099319 ~ 22099558 (+) True G178278
TU241502 lncRNA downstream 730766 22100040 ~ 22101283 (+) True G178280
XM_007260811.3 mRNA upstream 40828 21285246 ~ 21295849 (+) True cst8
XM_007260815.3 mRNA upstream 78090 21203262 ~ 21258587 (+) True LOC103023250
XM_007260812.3 mRNA upstream 159219 20842037 ~ 21177458 (+) True LOC103022731
XM_007260816.1 mRNA upstream 757892 20428762 ~ 20578785 (+) True galt
XM_015608722.2 mRNA upstream 929109 20404354 ~ 20407568 (+) True hdhd2
XM_015607071.2 mRNA downstream 563057 21932331 ~ 21964708 (+) True grin3a
XM_022681248.1 mRNA downstream 757847 22127121 ~ 22315307 (+) True LOC103046694
XM_007254085.3 mRNA downstream 953446 22322720 ~ 22334543 (+) False LOC103047607
XM_015607076.2 mRNA downstream 953567 22322841 ~ 22334543 (+) False LOC103047607
XM_007254086.3 mRNA downstream 953723 22322997 ~ 22334543 (+) True LOC103047607
TU241070 other upstream 1197113 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 1242815 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 1560886 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 1614288 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 2792680 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 879870 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 1091118 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 1091118 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 1092717 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 1117549 22486823 ~ 22491503 (+) False hnrnpdl