RNA id: XM_022681258.1


Basic Information

Item Value
RNA id XM_022681258.1
length 4131
RNA type mRNA
GC content 0.43
exon number 17
gene id il6st
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22865141 ~ 22880314 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCGCATAACTTGACGCAACATTACGTCCGGCTGTGGCAACTCGAGCGAAGGAATTGGTGCAGATGCCTGAGTGAGTAAGTGCGGATCGCGCAGATTATATCACGATGGATTAAAAACTAAGGGGAGGAGATAATTAGACGTTTAGACGTTATTAAGACTTCCTAAAACATTTCCTACAGACGTTTGAAGTTTATAAGTTACTAAACAAGACGAGTCAGTGAACATGTATTGAAGAAAAGCGCCTGGACCGTCCCAAGGTGCTGGCAATAAATATTGCAATGGGTACTTCACTACAACGATTACCGCTCATCTTCTGCATATTCTTCAGCTTTGCAGTCGGTTGCATTCATATACCTAAAATATACCCAGACTCTACTGAAAAGATTCCAGTTGAACTGGGGAAGGAATTCACTGCTACCTGTGTGCTAAACAAAGGTTCAAAGTACAGTGCAGATGACATCGAATGGTTGTTTGGAGATGTTCCTGTTCCTCGGGAGTTTTATaagaaaataaaccaatcagctgtTGCTGTTACTGTAAATATCAGTGCCGATATAAAAAGCCCATTAAAATGTAAGGCCTCCAAACAATCGCTGTCATATGAACAGCCATGTATGTATGGGATATACCTTTTAATGGGATATCCCCCATTAAAGCCAAAGAATCTGACATGCATAGCGCTTCAAGATGGTAAAAGGATATCACCCAATTTTACATGTTCATGGGATCCAGGGACCAGAGATCCACTCCTTCCCACCACCTATATTCTCTATGCAGGGGAACACAGTTCTAATAGTACCAAGACTCTCACTAACAAACTCACCGTCAATTTAAGCACTTTCCCAAATTTTATGACCATGGATATTAAGTTGGAAGTGAGGAATGTCTTGGGAAAAGAAATTGTAGAACTACAGATCTATTCACAAAAGTTTGTAAAACCAAATCCACCATCAAATGTGAGGATAATTCCGGAAAACAACTTTCCAACGTCTTTAATGGTGAACTGGACTCCTCCCATCCATGAATCAGTTTTAGAACTTAAATACCACATCAGATACTGCAAAGCAGGCGCCAGCGCTTGGACAGAGgtaAGCCAGGATGCCACTAAAGCTTACACAGAGTCCTTCAGACTTCAGTCTCTTCAGCCACACACTGAGTATGTGGTTCAGATGCGCTGCATTCAGCGTGAGAACGTTGGTTACTGGAGTGATTGGAGTTCAAACGCGACTGCTCGTACCCCAGAAGCGGctcctAAAAGTGAACCAGATTTGTGGAGAGTTTTTGGAGATGATGAGACAGATGTAAAACTGATTTGGAAGGAACCTGTGAAGGCCAATGGAAAAATACTAGAATATGACCTCTTCATTGAGGAAAGGGGAATCGCGCCTCAGAGGCTCGTGGTTGCTTCTAAAGAGCACCAGTACCATTTAAAGGGGGAAAACGCTTTTATCAATATGACTGCCAACAATTCTGCCGGGGTCTCTCCTCTGACCACTTTAGTGATCTCAAGACCTGATCTGAatCCTTATCCTGGAGTAGCCTACGTTAGTTGCTCCGTCCGTGACGGGAAGCTGTGGGTGGAATGGCTTCCACCCAAAGAATCCAGCATACGTGTCCACAAGTACTTGGTGGAATGGGTGTCGGTTCAAGAAAACAAGAGGGACTGGCAGAGAGTGTCAGGCAATACGAGGACAGTCATTATAGGTAACCTCGAGCCATTCAAGCGCTACAATGTATCCGTCTATCCGATTTATCGAGTTGGAGACAGAGTTAAGTACAACTGGCCAGGTAGAAGTGTTGGAGCTGTGGGAGCTTATCTCCAAGAAGGACCTCCTCTGAAAGGTCCTGCTGTTGATGTGACTAACACACAGAAGAATAGTGCTTCTTTACAATGGGAGGAGATTCCAATTTCCAGCCAGCGGGGATTTCTCACCAATTACACCATCTTCTATAAAACAGGAGACAATGAGCAATCTGTTGTGGTGGATAGCAGTTTCCTCTCCTACAAGCTGACAGGACTGGAGAGTGAAAGTCAGTACGTGGTGCACATCATGGTCAATGCGGAGGGCTCAGTAAACGGCTCTGATTCCAGTTTGTACACTAAGAAGTATGACGATGGTGAAATCGAGGTGATCGTTGTGCTGGTGTGCTTGGGCTTCCTGTTCTTCATAGTTTTCATAATGATGCTCTCCATCAAGAACAGAGAAGTGATTAAGAAGCGTTTATGGCCACAAGTTCCAGACCCCTCCCACAGCACTCTTGCTACCTGGTCACCTGACTGTCCCGTTAGGACGGACACTCCAAAAGAAGCCACGCTGCCCGACGTGAGCGTTGTGGAGGTGGACATATTTGATGGAAAGTCTTTATGTGAGGAGGATAAGACCATGCTCCCGCTGAAGAAGGACAAGTATTTCTCAGAGGAGCACAGCAGCGGCATCGGCGGCTCGTCCTGCATGTCCTCCCCGCGGCAGAGCGTTTCCGACAGCGACGAGGGCGACTCCGGCCAGACCACCGCCAGCACGGTGCAGTACTCCTCGGTGGTGGCCAGCGGCTATAAGGGTCAGACCCCCAGCCTGCAAGCCCCCAACTTCATCCGGTCTGAGTCCACACAGCCTCTCCTGGACTGTGAGGAGCAACCAGAGAGTGTActggacagcagcagcagcagcagcccccaGAGAAACTCTTACTTCAGACGAGGCGCAGGCCTGGAGCAGCTGCAGCCGCAGGAGGTCGAGGAGACGAGCTGCTTCAGTCCAATGGAGGAAGAGGACACGCCCACGCTCACAGAGGATCCTCCAGGCCCCGCCCCCGGGTACATGCCGCAGCAGAACGGCTACCGGCCCCAGTGAGAGAGCAGGACATGGACATTGACAGCTGATAAATCTCAGTGTTAACACAACCCTGTGCCTTCATTTATTGACCCAACGTAACTTAATGGCCGTTTTAAGGCTGAATATAAACTGCTGCTTAAAAACcaagaaaatgtatttcagCATCTTCATGCCGATACATACGTTAACTTTCAACGgaagtcaatgcaaaaaaaaagaaaaatatttctaGTAATTATAAAGCATTACTATTGGTCCATGAGTTGTCGTCATTTgacactataaagaaaaactgcCAGAATAAAAATTACgccaaaaaagtgaaaagaaaaaaaaaaaatggtgaaaggTTTTTGGGGGACAGCGCAAACTTTTTTGGTTTGTAactgtttctgtaaaaatgttaCACAGTCATCAGGCTTGAAACACACActtgacgttttttttttttttttttttttttaatgagttttaaccaaacattttgtttattatgaatatattttgtgtgtgatGCTTATAACAGTTACAGCTCTTAcactagggatgcaccgaaaTAAAGGTATTTGGCCGAAacagaacaaaatgaaacatttgcaacaaaaagagagaatatcaaacacatttttttttgcaggttttcattaGTTTTGCCACTTTCTGTTACtatagcataaataaaaaaaacctacatgcttttttttttgccattttcagcaAGATGAACATTCGATGCATCCCTATTGTCCAGGTTTATTGAGTTGACAGGTAAAGATAGCTCTTAtgaatgtattgttttaaaaagtgcatTACTGACTTAAATGTTGTGGCCACAAGTGCTTTTATTCTTAAAGAGGAGAATGCCAGTGTTTTCTTGCAATTGCATACCATTTAGTGGACCACTGCAACCTGTCTGTGTTGAAATGAAGCTTAAGGAAAACCCTAACTTAATTCCAACTTCACTAAAACTTGGACACCAACTTCTTGGAGTATTCATAAgactttaataataatgtttgtgAAATCTGGGCAAACTGTGGCATTCCCAGTTAATACTGAAACATTGTTGCACCTTTGGGTCACGATATGAAGCTTTATGTACTCAACTAAATGTTTTCCAGTTTGTGCAGAAGAAAATCAACACTACATTATCTCAAGTGACAGATTAGGAGCAATTTAATGCATGCCTTTTCACATGTATCTATTCTCAGATGTCACCTGATATTTCAGCACTGATATTACACTTTGTAATAACCGTATagagagaaataataaaacCTTATTAATCAAAACCAA

Function

GO: NA

KEGG:

id description
K05060 IL6ST, GP130, CD130; interleukin 6 signal transducer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241671 lncRNA upstream 144335 22713737 ~ 22720806 (+) True G178394
TU241669 lncRNA upstream 156740 22707748 ~ 22708401 (+) True G178392
TU241655 lncRNA upstream 193311 22629911 ~ 22671830 (+) True G178381
TU241641 lncRNA upstream 259569 22604995 ~ 22605572 (+) True G178368
TU241604 lncRNA upstream 341068 22516531 ~ 22524073 (+) True G178344
TU241801 lncRNA downstream 49909 22930223 ~ 22930945 (+) True G178472
TU241803 lncRNA downstream 55169 22935483 ~ 22941621 (+) True G178474
TU241808 lncRNA downstream 60290 22940604 ~ 22941149 (+) True G178476
TU241809 lncRNA downstream 62812 22943126 ~ 22943349 (+) True G178477
TU241817 lncRNA downstream 70649 22950963 ~ 22957159 (+) True G178482
XM_007255340.3 mRNA upstream 1758 22839508 ~ 22863383 (+) True ankrd55
XM_022681261.1 mRNA upstream 337058 22519419 ~ 22528083 (+) True LOC111195066
XM_022681262.1 mRNA upstream 349556 22509888 ~ 22515585 (+) True LOC103022635
XM_007241051.3 mRNA upstream 362982 22493440 ~ 22502159 (+) False LOC103022948
XM_007255282.3 mRNA downstream 28479 22908793 ~ 22928244 (+) True slc38a9
XM_022680721.1 mRNA downstream 84679 22964993 ~ 22966528 (+) True LOC111194992
XM_022680703.1 mRNA downstream 90108 22970422 ~ 22973005 (+) True LOC111194985
XM_022681271.1 mRNA downstream 114775 22995089 ~ 23187224 (+) False LOC103038592
XM_022681270.1 mRNA downstream 114776 22995090 ~ 23187224 (+) True LOC103038592
TU241665 other upstream 155584 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 319011 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 362982 22493440 ~ 22502159 (+) False LOC103022948
XR_002651460.1 other upstream 362982 22493440 ~ 22502159 (+) False LOC103022948
XR_002651462.1 other upstream 373638 22486823 ~ 22491503 (+) False hnrnpdl
TU241823 other downstream 83133 22963447 ~ 22964989 (+) True G178485
XR_002651470.1 other downstream 823673 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 1567566 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 1621560 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 4033572 26913886 ~ 26916344 (+) False rnasek

Expression Profile