RNA id: XM_022681284.1


Basic Information

Item Value
RNA id XM_022681284.1
length 2451
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC103034079
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23494154 ~ 23497618 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGATAAACTAAATGAGCAATCCCTTTATGGCAAAAATGACAAGAACACATACAACCAGAAACAGTACAGCGTCACTGATATCTCAATCACTCTGAAGTTGGCTGACCATGCAGTTTCCGTGGTAGATCTTTGCTCTCTTCAGTTGAAATGCAAAAGCATGCTGCGTTATTTCATCTCCATTTTTGAACGAGATCAGAAAGTTCCTTTCTTGCAGTCGTGCATTTCCAGAAATCTCATCTTGGACAAATATCTAGACCACCCTCCTGAACCGATGGAGCTCAAATTTGAGGCGCTGAATTCATTCCTGGAGCTACAGATGATGGTGGAAGCTTATCAGTTTGTTGAAAACAAAATCAACTTTCTGAGCAGAAAAGCTACCTTCAGGAGCTTGCTTTGGTACGATCCTTCTCTGTACGGTGAACTGTACAAGGGTGCTGTAGGCTTCCAGCAACAGTCATCGCTGTTTTCATCGTTCCAACAGGGCATAGCCACTGAAGGCTATAGGAAATTGCAGGAGTATTACACTGCTGTATCCACACTGCACCAGCAGCTACAGGATTCCCCAGACACATCATACTACATGTACCTGAAGAGCAAACGAGAGCGGCTGGAGGTCGAAGCTGCTCTCAGAAACCCGCCTGATATTAAGAGCTTCTTTCTGTCTGTACCAGTAGCTCTCATGATGAACCTTGGTGACACTTTAGAAAGTCTGGAAAAGTCACATCGTATAGTCATGAGCTTTGTGGAGACACCCTCAGATCGTTTGCCGGGGGTGTTTGATGTAGGCAAAGCAGAGCATCTTTCCATCATGTGCAGGTATCTCCAAGAAAAAGTCATCTTTTTGAAATCCAAAGAACAGATCAGTAAAGTGTCCTGGTTTGGCTTAGAGCATCTTCTTTATGATGCATCTAAGCTTCTCGTGTGGAGAGAGTCGGCGCACGGAATGTCAAGTGAAGTGCTGCTCCAATACAAAAGGTCAAACCCACAAATTGTCTACGGTGTGACGGAGGCTGGTGTACCGCTGGTTAACAAAATAGAACAACACCCTGCGCAGCCTGCAGAAAGAGCACGAATCACACCAGAGCAGCAGATGGTGGATGGTTCCAAAAATTACAGAGATACACACTCGGAGATCTCGACTGAGAATACACACAGCGCGCAGGGAAATCAAACTGAAGAAAGTATGAAAGAACCAAACCAGCAAGTTAGAAGAAGGGCAACTCATCCCCCAGTGAGAAGTAACCTGACTGATGGTGGTCTCTACCTACTCAACCCTGTTCAACCCAGTGTGCCAGCCCAACTTGGAAACCCGACTCCTCTCCCTGCTTTCTCCCAGCAGAGCAATCCTGTACACTGGAGGATGGCTGGACCACAAGCTTGGGACTGGAAGCCACCAGGCGTGGGGCAAACCTCGAAATCGACCCCTGAAATCCGGGCTTTGCTTATGTCGAAGAGGAGGATGACTATACCAGGCACAGAACCAAGAGTAGACCTCCGGACAAACCCTGCCTCCACCTGGCTTCCACCTTACAATATAAGTCCAAGAGCTGCGGAGAGAATAACCCTCCATCATCAGCCCACGCTCGGTGCAGCTCATCATTCTGAGCATAGAAAAGAGCAAGGCTCTGAAGCTCCTGTACCTCTAATAAAGCCTATCCCATTACAGTGTTTACCTCCAGACACTAGTTCTTTATCTGTTCCACACCTGCCGTTCCCCAACACTTCAAACCAGCTCCCATCACATGAGATACCGATGCCAATCAACTATCCTTACTTCCTTTTTAACGGGAAAACATACTCCGCCGTGACCCCCTCTGTGCCAGTGCCTGGACCAAGCCTTCATACCGAAACTCAATATCACCAACCCCACCCTGTTTAGAGACTGAATCTGCTCTCATCTGCTACTGTTACCTAAGGGCACTATATACTAATGCGCCCATTTCCCTGTATAATGGATAAAATGAGCGTATCTTtcaattattatattgttactTTTCCCTGTACATTCAAAGTCTTTCAGGACCCGTAAATCaatgtctgttttaataaattgagtgtaaatataagaaaaaaaataacacagaatGTACAGTATGTCTTTTTTACgctgtttatattatatgttataggATACCACTGTAAATAGATGTTACACATGCTTATGTAAATACTTTTGTATTTATCTTGAACTGCATTATAACATTTAATTGTTAATACATTGtttataaatggcaaaaatgcTCTTGGCACCATGTCATAGTCTGTATCTctgtatacagtgtatatttttacttttctcaTGATTAATATGTGAGACATTACTGAGTGTGTAAGAATGTGAACGTGAAGATGATGCTACTAACTAATATTTCTGAACACATACTTATTATTACGatctattttatttctgttttagtaTTTATGataatgtattttaacattaaattctT

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0002521 leukocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0001775 cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241985 lncRNA upstream 18949 23447089 ~ 23475205 (+) True G178611
TU242000 lncRNA upstream 61443 23427385 ~ 23432711 (+) True G178624
TU241999 lncRNA upstream 67657 23425155 ~ 23426497 (+) True G178623
TU241991 lncRNA upstream 75811 23411105 ~ 23418343 (+) True G178617
TU241990 lncRNA upstream 90420 23402970 ~ 23403734 (+) True G178616
TU242008 lncRNA downstream 2225 23499843 ~ 23500341 (+) True G178632
TU242013 lncRNA downstream 17957 23515575 ~ 23515901 (+) True G178635
TU242010 lncRNA downstream 18693 23516311 ~ 23519214 (+) True G178634
TU242192 lncRNA downstream 690368 24187986 ~ 24191257 (+) True G178781
TU242218 lncRNA downstream 794357 24291975 ~ 24293344 (+) False G178805
XM_022681283.1 mRNA upstream 32179 23459368 ~ 23461975 (+) True purg
XM_007255267.3 mRNA upstream 276896 23203476 ~ 23217258 (+) True fut10
XM_022681270.1 mRNA upstream 306930 22995090 ~ 23187224 (+) True LOC103038592
XM_022681285.1 mRNA downstream 5689 23503307 ~ 23514711 (+) True ppp2cb
XM_007255251.3 mRNA downstream 5689 23503307 ~ 23514711 (+) False ppp2cb
XM_022681286.1 mRNA downstream 44232 23541850 ~ 23690355 (+) True LOC103037096
XM_007252428.3 mRNA downstream 950174 24447792 ~ 24451993 (+) True LOC103032894
XM_007252430.3 mRNA downstream 974588 24472206 ~ 24482883 (+) True gramd2b
TU241823 other upstream 529165 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 784597 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 948024 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 991995 22493440 ~ 22502159 (+) False LOC103022948
XR_002651470.1 other downstream 206369 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 950262 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 1004256 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 3416268 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 4026700 27524318 ~ 27525389 (+) False LOC103038954

Expression Profile