RNA id: XM_022681350.1


Basic Information

Item Value
RNA id XM_022681350.1
length 5363
RNA type mRNA
GC content 0.44
exon number 22
gene id LOC103046108
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26993596 ~ 27443231 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctcgctctgtgttTCTCGTGCCggctgctgctgatgctagCGACTGCACTGGGCTGTTTACTCATAATTCATACCGCGGGGTTGCGCTCGGATCCGCTATGCTCGCCTCCATCTGGTACGCCAAGAAGCTGGGGCGCAGGCTCGTGCAGAACGCCAGGAAAGCCAAGATGCAGAAGgcAAGCCCTGCACCAATTATAGTCAACACGGACACTTTGGAGTCGGTACCTTACGTTAACGGGACAGAAATTGAATATGAATTTGAAGAAATCACCCTAGAGCGGGGTAACTCAGGTTTGGGCTTCAGTATAGCAGGCGGGACAGATAACCCTCACATTGGGGACGACCCCGGAATCTTCATCACCAAAATCATCCCTGGTGGAGCAGCAGCTGAGGACGGCAGACTTCGggTGAATGACTGTATCCTGCGTGTGAATGAAGTAGACGTGTCCGAGGTTTCCCACAGCAGGGCGGTGGAGGCGCTGAAGGTTGCTGGCTCCATTGTTAGGCTGTATGTACGCAGAAGAAGACCCATGCTGGAGACCGTGGTGGAGATCAAACTCGTCAAAGGACCAAAAGggctggGGTTCAGTATCGCAGGCGGAGTGGGGAACCAACACATCCCAGGTGATAACAGCATCTATGTCACCAAAATCATTGATGGTGGAGCGGCGCAGAAGGATGGCAGGTTACAGGTTGGCGACAGACTCCTGATGgtaaaTAACTACACCCTGGAGGAGGTCACCCACGAGGAGGCCGTAGCCATACTGAAGAACACGGCAGACGTTGTGTATTTGAAGGTGGGGAAGCCCACTAGTGTTTACCTTTCCGATCCCTATGGGCCTCCCGATATTACCCACTCGTTTTCCCCTGCTATGGATAATCATATCTCTTCTGCTGGTAATAATGGGACTCTGGAGTATAAGTCCAGTCTTCCCCCCATCTCCCCCAGCCGCTATTCGCCCCTGCCGCGCCACCTGCTAGGGGAGGAGGACATTAACAGGTTGGATGGCTTTTCATTCTTACGGGAACCCAGGAAGATCGTGCTGCACAAAGGCTCCACCGGCCTGGGCTTCAACATCGTGGGCGGCGAGGATGGCGAGGGGATCTTTGTGTCCTTCATCCTGGCTGGGGGTCCGGCAGATCTCAGTGGAGAGCTACGGAGAGGAGATCAGATCCTGTCTGTTAATGGCATTGATCTGCGAGGGGCCACTCACGAGCAGGCTGCAGCCGCGCTTAAGGGGGCGGGACAGACGGTCACCATCATCGCCCAGTACCGACCTGAGGAGCTTGCGTTGTGCTCTCCGCGCCGGGCCCCGCCTCCAGCCGCAGAGTACGGACGCTTCGAGGCCAAAATTCATGACCTGAGAGAGCAGATGATGAACCACAGCATGAGCTCTGGATCAGGATCCCTGCGAACCAATCAGAAACGCTCCCTTTATGTGAGGGCACTGTTTGACTATGAGCGGGCGAAGGACAGCGGTTTGCCCAGCCAGGGTCTCAGCTTCCGTTACGGAGACATCCTGCATGTCATTAATGCTTCTGATGACGAGTGGTGGCAGGCGAGGAGAGTCACTCCAGATGGAGATAGTGAGGAGATGGGTGTCATCCCCAGCAAGAGAAGGGTGGAGAGGAAAGAGCGAGCTCGCCTAAAGACAGTCAAATTCAACGCAAAGCCTGGCAGTATCGACTCTAAAGGGtCATTCAGTGACAAACGTAGAAAGAACTTCATCTTTTCACGAAAGTTCCCTTTCTACAAGAACAAGGAGCTGGACGAGCAAGATGGCAGCGACTCGGAACGGAGTCAAGAGGATCTGATCCTGTCTTACGAGCCTGTGATTCGGCAAGAGATTAGCTACGCCAGACCTGTTATTATTCTGGGGCCCATGAAGGACAGGATCAATGATGACCTCATCTCTGAATTCCCCGATAAGTTCGGCTCATGTGTGCCACCGGATAACAGTTCAGGGCAAACCGATACCACAAGAGCAAAGCGGGACTACGAAGTGGACGGGCGAGATTATCACTTTGTAACCTCGCGAGAGCAGATGGAGAAGGACATCCAAGAGCACAAGTTCATCGAGGCCGGACAGTACAACGACAACCTGTACGGAACCAGCGTCCAGTCAGTCAAATACGTGGCTGAAAGGGGGAAGCACTGCATACTTGACGTATCTGGAAACGCCATAAAACGACTACAAGTAGCACAACTCTACCCTATTGCCATCTTTATAAAGCCTAGATCCATTGAATCTTTAATGGAGATGAACAAGAGGTTGACGGAGGAGCAGGCCAAGAAGACGTTCGACCGTGCCATGAAGCTGGAGCAGGATTTCGGGGAGTACTTCACAGCGTTGGTGCAagcagacacattggaggacaTTTACACTCAATGTAAGATGGTGATAGAGGAGCAGTCTGGACCTTATATCTGGATTCCCTCCAAAGAGAAGCTATAAGGAATACACTGCCCTGCCAGGGACCTTggactgcaagaaaaaaaaacaacaaaaaagaaccaaaaaaaaaacaacaaaaatacaacaaaaacaacacatagGCATAATTTGTAACATATGATAAATTATTATGgtaatgtttattattgataATTATAGTGAagactcttttattttttcgttttgttttattgtttgtttgtttatgtctgttttgtttttcactttcaatatGAATGTTCCTGAATGTACACCACAAAGTGTTGGAAACATTTTTGGCCTCGATAAAAAGGActgtttgtatatttattgGTTTAGTAGTTTTACGAATCGAGAAAATAATCCATCCAGCGCGTTGAGGAACTTCGGCTTGTTTCCGTGCGCGGCTCATTTTCGGCTGGAATTTTCCGACAGGGAAGGACGGAGCACGCAGGTCAGGACACCGCAAGATGGAGGAGTTTTACACCGCCGCAGCCTCCCAGAGGAAATCGTCCTAACGATATCAGCTTGCCCTGCCCCTGCAGGTCTGcgtttccctccctccctctctctctctctctttcgctctctctttttcactccaCAGCGCTCCACATCTCACCCGCTCTGGGATCTATGCACTTCCCCTCGTcacactccatctctctcctaTTATTCAGACATTGCTTtcgtatttattattttttccccctcatcGCCATTTCCCCGCGCCATTCGAGCGTCTCCTTAAAGATTTCTAGTTTGAAATTGTTAAACTGTACATGTAGCTACGTTTCTAAAACAGAACTTTCAGAACAAGTCAACAGATGCTTTAATTAGTGTAAACTGTAAAAGGGATACAACTGGGTATAGGAAATATGACActatattttgctatttatattgaTAGAGGGCACAACAgcacagaaatatttataaagataatgtataactttgtttaaaaaaaaaactacttttggaaaaaaaaaactgattttactGCTGTAAGATATAGTCTTGTGGTAGATGTAGTACCGGCGCCGGTGGGGATGTTGTGTTTCCTGTGGCCCCTGGTTTTCAGCAAGGGAATGCCTGTgtctgatctgtgtgtttttgagtgaatgaatgaatgtgtttcagtgtgagtgtgtgtgcgcgtgtggtAGGGAATGCAGTGTGGTGACCAATACATTTTTCTGTAATCTGACATCTGAGCCAGATTTATAGTGTCTAGACTGAACCCAGTTCTCAAAGCGAATTCTTATAAAGGGTTGATTGGAGTTGAATCCAGATCAAAGATGCCCAAATACTTTGTCTTCAGAAGGGAAAAGgccaaaaagacaaaacaatacacaatatactTAGAAAAGTATATtctaaactacatttaaaagtaaaaaatatcttacattacactacatcttgatgctttttttatgtacattttaaatgcattatacAAAGAAAATCAGTAAATTAAACTTACCAAATCCTTAAAAATGGTTCTTCCAGGGTTCTTTGGTAAATACAGTGCttattttaatgctatttagTTCTAAACCATTATGTTTCtggttataattttttattttttcctttacagaTAAGGAAACATTCATGTTGGTTCTTTAAGCCATTTTGGGCAGCCTTGATCTAGATCTCCCCCCAAATCATTACTGCCTTCCTTCCCAACAGGATAAGAACCCCCATACAGAATGCTGTTactgttatataataataaatcaaatttaaattaGAATTTAATGTAACGCACCAACTTTTGGAatttagtttaattaagtgTCATCAAATACTGGGCCCAAAGCCACTCAAAAATGTGTAACCGCCTTCTAACACAAGTAgacccctcacatttttgtaaatattttattatatcttttcatggggcAACACTGATGATACAACAgtttgatacagtgtaaagtagtcagtgttcAGCTAcaatataacagtgtaaacttGCTGTGCCCTTAAAATAATTCAACATACAGCTGTTGACGTTTACATAAATGTGAGAGGTGAGTTCACTTTTGTGAGAAACTGTtaaaatgccaaaaaataaaGGAGCTTTAAATGGTTCCTTGAgcgatgccatagaagaaccacattttttaatctttaaatggGTGAAGAACCATCCTTTACATCAACTTTAAAATTAGAAATGAGTCTCTTTAGTCTCCTAAAAAAATTCTACACACTCACATCTTCTTTAAAAACACCTAAAGTGGTTCTTCTTTAATGGAATCAatcaaagaaccatttgtattacacttacattttaaaaagtgtgcaGAAATGAGATAAGATCTAAATCTAAGCAGGCTGAGGTCATGAAGCTGGCCCGTTACGCTGcttacaagttttttttgttttgtttttttccctgaCATacttacacacatgcacacacacacaaacctgttTACAATGCATGCATGCACTGCATAAATCTCTGCGAACTGAATCATGCTGTGTAAGTAGCTTGCTTCCCCATACATAcgccctgtattttttttatctacacgCAATGAAGACATGAGTACATTCCCACAGCTGACGTTTATAAGAACTGCGAAAGCACTAATTCCAGGAAACTGTAGTACTGAGTTCGTTgtgagagaagtgtgtgtggggcAAGAGGCCTGCTGACGTATTGGTCACCACCacttgccttaaaaaaaaaaaaacaagtgtgtttttttaacgcTCTGTCTTCCCACTTTTGTGGATGTCATCTTCTCGGTGGATGACTGAGGACGTGAGGATGGTGAGAGAATGCTATTGTGTAACGTTATTATCCTCGGAAGACAAAGATCCGTAAGCATGGCGTACACTGGAAAATGGGATGCAATGAATTTCTGTGCTTTttccacatgaataaaatatatcgACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243126 lncRNA upstream 119619 27106303 ~ 27106693 (+) True G179399
TU243113 lncRNA upstream 171148 27054949 ~ 27055164 (+) True G179390
TU243042 lncRNA upstream 337213 26884416 ~ 26889099 (+) False G179345
TU243094 lncRNA downstream 1546 27444777 ~ 27447272 (+) True G179371
TU243154 lncRNA downstream 4164 27447395 ~ 27448989 (+) True G179427
TU243156 lncRNA downstream 6171 27449402 ~ 27466359 (+) True G179428
TU243157 lncRNA downstream 8316 27451547 ~ 27452069 (+) True G179429
TU243161 lncRNA downstream 26486 27469717 ~ 27469950 (+) True G179432
XM_007236222.3 mRNA upstream 237964 26983250 ~ 26988348 (+) True crebzf
XM_007236221.3 mRNA upstream 253911 26941357 ~ 26972401 (+) False sytl2
XM_022681353.1 mRNA downstream 52884 27496115 ~ 27510446 (+) True hyou1
XM_007243427.2 mRNA downstream 81071 27524302 ~ 27525388 (+) False LOC103038954
XM_007258122.2 mRNA downstream 110971 27554202 ~ 27560568 (+) True crtam
XM_007258124.3 mRNA downstream 118632 27561863 ~ 27566576 (+) True LOC103043364
XM_022681359.1 mRNA downstream 124497 27567728 ~ 27590235 (+) False c20h11orf63
TU243054 other upstream 309968 26913886 ~ 26916344 (+) False rnasek
trnam-cau_40 other upstream 2724367 24501874 ~ 24501945 (+) True trnam-cau_40
TU242273 other upstream 2771690 24447880 ~ 24454622 (+) False LOC103032894
XR_002651470.1 other upstream 3518463 23703987 ~ 23707849 (+) True LOC111195073
TU241823 other upstream 4261323 22963447 ~ 22964989 (+) True G178485
TU243090 other downstream 81087 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 81087 27524318 ~ 27525441 (+) True LOC103038954
TU244158 other downstream 3696113 31139344 ~ 31151095 (+) True G180235
TU244193 other downstream 3989967 31433198 ~ 31433909 (+) True G180266
TU244438 other downstream 4828838 32272069 ~ 32273798 (+) False G180460

Expression Profile