RNA id: XM_022681354.1


Basic Information

Item Value
RNA id XM_022681354.1
length 2015
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC103027279
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27511131 ~ 27518562 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAAGTGACAGAGACCCAGACGCAGAGGGAGCGTGAAGACGTGCTTACAAGCCAGGACACAATGTGGCTGCTTCTCCTACTGTATCAGCTTGGCCTGATTCTCCACAGCTGTGCCCAGAATCCTTGTTTTACAAACCCTACATTCAGAGAGCCAGCCAACTCAGATATCACGGTCGTTTGTGGCCCACACAGGATTGATCTGCGTATTCTGCTGTGTCCCATTTACTTTGGAGGATATAATGAAACACTGATGGCTCTGAACAGTGTCTTCAACAAACCAGAATGCATGGGGACCCCGGTGTGGTCTGTAGACCCCCCTATCCTCCGATTTCAGTTTCCTATCACTGAGACAGGCATCAGTGCGTGTGCtactaaaataaagATCACCCAGGAGATTGGTTCGGGGATCTTCGCAGACTATTCCATTGTCCAGTATGTGAACATCTTGGGAATTGTGAACTCACTGGACCCAGGTGCTGGAATAATTACCTATCATTCTGAGATGATTTACTTGTTCTCCTGCCGATACCCACTGCAGTACCTGGtcaacaacacagagaccagcGTATCAGGAGTGAGCCTGGCCATTAATGACAATAATGGCAGTTTCATTCAAACTCTTAATATGAGGCTGTATGAGGACAATAAGTACACAACTTATCTCCAGATACCCTCATCAGGAATGCAACTGAAAACCAGGATTTATGTGCAGGTTCGGGCCACTAACCTCACAACAAGGTTCAATGTTATGCTGGATCGATGCTATGCCTCCATCAGCCCATACCCTATAAACACCACATACTACGATCTTTTTGTGGGGTGTACCCGTGATAGTCAGACTGTGATGGGTATCAATGGTGTTAGTCAAGAGGCTCGCTTCTCCTTTGAGGCCTTTCGGTTTGTTGAGCACAGGAACCAGACCATATCCACCTTCTATCTGCATTGTGCTACCAGACTCTGTGAGAGTTCCGCCTGCAGTAGTCTTCGGCCGAATTGTACGACATCTGGGAGAAGAAAGAGGGGGGTGAATTCAGAGCAAAACACCATAGTAAGTGACATGGCCACTGTCAGCTCTGGACCCATCATCACCTCAGTGGACAATGGTGCAGAGTCACGACCGTTTTCATCAGCAAACGAAGAGTcccaaaaaaacagcacagtgtTCGGTGTATCAGTAGCTGTTGGGATGCTTGGCACACTCTGCGTCACCCTGCTGGCAGTGATTATCTACCGGATGCACAGGGGCAAGTCTGCTAACGCTGCAGAGAACAGCTTCTTCCAATGAGCATACTCACAAAGACAGAGGTGCTGAACTGGGCCTAGCTATTGCATTTCAGAATTTCCTAATATATTATAAGGACAAAATACATTCCACATGTCCAGTGCCTTCATGGAATTCACTCTGTTGAACTGCTCAACAGAGTAGGAGTATTGATTTGGAGTTGGAGTATTAATTATTGGACATTAaagaaatgctgtttttttagtttaatctCTGTTTGTAACATATCAATTACCAGGTCGGTACCAAAAATAACAGAACAGTCATACCTTGCAATAATAgattaaaatacacaatacCATACTTTGCTTTGAGAATAACAGTATTTGGCATGCTTTTTAGTACAAGCTATacataattaaacaaacaaatgattaCTCTCATCTAGATCAGATTCTGAAACTTTACTTTCAGTAACTACAAAACTTTCCAAACACCAGCCTGGTTACAGGAAACCTGTGATGCTTGAAAGGAACACAAGTGACAAATAGAAGTGGAGGCTTAGTCACTAATTTTCTCTTACACGAAATTTGTACTATAACCAGACATAActacatatctttttttttttttttttgcatgcagtttttatataaaataaataagctatGTGTAAATGTTGAGATTCTTCTGCATGTTTAATAATTGACTATCTTCTGTTGTCACACAATGTTTTGTTGTAGAAAGTGCATAAAAATACCTTCAGTTATccaaataaaacactaaataccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243329 lncRNA downstream 3154 27505695 ~ 27507977 (-) True G179572
TU243280 lncRNA downstream 495165 27015745 ~ 27015966 (-) True G179528
TU243276 lncRNA downstream 500313 27010524 ~ 27010818 (-) True G179524
TU243233 lncRNA downstream 622046 26885487 ~ 26889085 (-) True G179490
TU243232 lncRNA downstream 625254 26884446 ~ 26885877 (-) False G179490
TU243342 lncRNA upstream 43283 27561845 ~ 27566692 (-) False G179578
TU243371 lncRNA upstream 144425 27662987 ~ 27663294 (-) True G179596
TU243372 lncRNA upstream 148197 27666759 ~ 27667611 (-) True G179597
TU243419 lncRNA upstream 169564 27688126 ~ 27691388 (-) True G179642
TU243429 lncRNA upstream 394268 27912830 ~ 27964374 (-) True G179651
XM_007258127.3 mRNA downstream 17765 27480659 ~ 27493366 (-) True vps11
XM_007258128.3 mRNA downstream 33171 27470086 ~ 27477960 (-) True ift46
XM_022681352.1 mRNA downstream 44457 27447351 ~ 27466674 (-) False LOC103044875
XM_015608082.2 mRNA downstream 59460 27447351 ~ 27451671 (-) True LOC103044875
XM_007236223.3 mRNA downstream 519498 26988617 ~ 26991633 (-) True tmem126a
XM_007243426.3 mRNA upstream 4569 27523131 ~ 27524135 (-) True LOC103038646
XM_022681355.1 mRNA upstream 10098 27528660 ~ 27539710 (-) False zpr1
XM_007258125.3 mRNA upstream 10098 27528660 ~ 27539710 (-) True zpr1
XM_007258116.3 mRNA upstream 73009 27591571 ~ 27594524 (-) True bsx
XM_007258115.3 mRNA upstream 81530 27600092 ~ 27606283 (-) True LOC103041089
TU243317 other downstream 33153 27473355 ~ 27477978 (-) False ift46
XR_002651480.1 other downstream 46268 27464039 ~ 27464863 (-) True LOC103045184
TU243326 other downstream 67815 27440231 ~ 27443316 (-) True G179569
TU242660 other downstream 2303778 25204829 ~ 25207353 (-) False LOC103025094
TU242520 other downstream 2376975 25130982 ~ 25134156 (-) True G178982
TU243318 other upstream 4572 27523134 ~ 27524109 (-) False LOC103038646
TU243357 other upstream 5766 27524328 ~ 27525388 (-) True G179583
TU243338 other upstream 44412 27562974 ~ 27566692 (-) True G179578
TU243339 other upstream 44412 27562974 ~ 27566692 (-) False G179578
TU243597 other upstream 1332128 28850690 ~ 28851105 (-) True G179816

Expression Profile