RNA id: XM_022681373.1


Basic Information

Item Value
RNA id XM_022681373.1
length 4126
RNA type mRNA
GC content 0.48
exon number 25
gene id picalm
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29572654 ~ 29628399 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTCCTTTTAAAAGGCAGCGAGGGGGAGGCGAGGCCGGAGAGGAGGAGAGTCTGAGAGACGGAGGAGAGGAAAAGGAAAAGGGGGAAGCAGCACCTAGCTAGCAGAAcgaaaaagagaaaggagagaggagagagaggtgctgagagagagagagtggagctAGCTGGAGGACTGTGGGGTTAGCCGGCTAAACTAATAGAAGAGAAACCGTTAACGTTTTTCTTTACTCAGGTGGTGGAGGAACCGTGGTGGAACCCCAGCGTTGCTAAAACATTGGATTTACCAGGAGATTTATTCAGCTACTGTGATCGGGTTTTTGGGCTTTTGGTTAACGTTGCCGAACCGAGAAGATGTCTGGACAAAGCATAACGGACCGGATAACCGCAGCGCAGCACAGTGTGACCGGCTCTGCTGTGTCCAAGACGGTGTGCAAGGCGACCACGCATGAGGTTATGGGGCCAAAAAAGAAGCACTTGGATTATCTGATCCAGTGCACGAATGAAATGAATGTGAACATCCCTCAGCTGGCAGATACGCTGTTTGAGCGCACAACCAGCACTAGCTGGGTGGTGGTCTTCAAATCCCTGATCACCACACACCACCTCATGGTTTACGGAAATGAGCGATTTATTCAGTACTTGGCTTCCAGGAACACATTATTCAACCTCAGTAATTTTTTGGACAAAAGTGGCTTACAAGGCTACGACATGTCCACGTTTATCCGGAGGAGTAGCCGCTATCTGAACGAGAAGGCTGTGTCTTACAGACAGGTCGCTTTTGACTTCACTAAAGTGAAAAGAGGgTCTGATGGTGTGATGAGAACAATGAACACAGAGAAGCTGCTAAAAACCCTCCCCATTGTCCAAAATCAGATGGACTCTCTTCTCGATTTTAATgtaaaTGCCAATGAACTCACAAACGGGGTCATAAACGCAGCCTTCATGCTCTTGTTTAAAGATGCCATTCGGCTGTTTGCTGCCTACAACGAAGGGATCATCAACCTACTCGaGAAGTACTTTGATATGAAGAAGGCTCAATGTAAAGAGGGACTCGACATCTACAAGAAATTCCTCACCCGAATGACAAGAATCTCAGAGTTCCTCAAAGTTGCTGAGCAAGTGGGCATTGACCGAGGAGACATTCCAGACTTGTCTCAGTTTACAGTCTGTGCCCCCAGCAGTCTTCTGGATGCATTGGAGCAGCACTTGGCTTCACTAGAGGGGAAGAAGGTGAAGGACTCGACGGCGGCCAGCAGgGCCAGTACGCTATCCAACGCAGTGTCCTCTCTGGCGAACACGGGCATATCTTTCACCAAAGTGGACGAGAGGGAAAAACAGGCTGCACTGGATGAAGAACAGGCTCGTTTAAAAGCACTTAAGGAACAGCGCCTGAAGGAACTCTCCAAAAAGCCTTCCACATCCTCCACCACGGCTGCCTCTCCAGTCTCTACAGCAACTGGCACCATCAGCACTGCCCCGGCCATTGACCTGTTCTCCACACCCAGCTCAACCAGCAGTACTACAAAGGTGCCAAGTGATCTTCTTGACCTGCAGCCAGCGTTCCAGCCTTCTCTGCCACTTCCCACTGCTCTGCCTGTAACCAACACATGGGGAGATCCtttcacttcttcttcttcagagaCTGTCGACGACTCCATTCCAAACTTAAACCCTTTCCTTGCCAAACCTGTCGATGTCGCTCATCTGCCTCTTGTGTCTTCAGATGCTGTTAGTTTTTCTTCTAGGACACCCAGTCATGAAATGTTTGGTGATCATTACAATCCCTTTCTCGAGTCAAGCTGCTCTGTTGCCTGCACACTCGAGCCCTCTGCTCGGATAGAGGGTTTTCTCTCAGACTCGTTCTGTTCTCCGGCCCCCTACTCTAACACCCCGCTCTTCCACTCCGAGCCCTCCAATGTAGCTGGACTATTCGGAGGGTTTTCAGCGTCCCCCGTCCCCCAGCCCGCCAGCTCCTCCAGCCTTAACGTTGACTTCGACTCAGTGTTCGGCAATAAATCCACCGCTAACAACACAGACGCTGCCGATGATGTTTTAGGTGGTATTTTAAAACCCACAGTAGCCTCTCCAAACCAAGGCCTGCCGCCCAGCATCCATCAGCCTAACAAACTGGTCTCTGACGACCTGGACTCCTCCCTGGCCAACCTTGTGGGCAaTCTGGGCATTGGAAACGGCACAGCAAAGAATGATATCCATTGGAGTCAGCCGGGTGAGAAGAAGTTGACTGGTGGAACCAACTGGCAACCAAAGAATGCTCCCACCACAACATGGAACCCTGCCACGATGGCGCCGTCCGTCATGGCTTTCCCTGCCACAACGCCCACAGGCATGATGGGATACCCAATGCCACCACAGATGGCCCCAATGGCCATGATGACGCAGCCCACCATGATGTACACGCAGCCTGTGATGCGGCCGCCTAACCCTTTCGGCCCAGTCTCAGGAGCACAGCCCTCGGCTGCCTCTAGTCCCTCCAGTCAGAGTCCTCTCAGGCCTCCAGGACAGGACCCCTTTGCACAGCTCTCTCTCAAGGATTTCCTTTAGAGACTCTCTTAGATGCAGTTCATgtgaagcagcagcagtgcgTGTGCACTCCCAGAGGACGAATCGAATCACACAGCAGCTGATCTTAAACCTTTAATCTGTCCCCCAGTTCACTGTATGACTCCAGCAGAAGAACGTGGCCCCAGTACCGGCTCTTACAGGACGCAGGGTTGAGAGGTGTTTGGGTGGGGTGAAGGGTGGGAGTGGGGGGTGTGTATGGTGAGGGACATCAGGCAGTCTGGCGagtgtttttgtaatttgtctAACAGTAACAGAGCTGCAGTTGTTTTCCCCGTACAGAACTGAAttcaacagacacacacatgggTTATTAGTGGAGAGGTAgggggagggaggaggaggagtcttTGAGACCACAGTCGGGGATTGACGCACAGCTTCACGTTCTACTCTGGGAAGGGAAAGAGAAGGGGTGGGTGGGGGGCGGGAGTTATTTCTTTACCCGATCAGAAATCATGCATTATGTAATTTAACCACCAACATTTAAATATGCTGACTTGAGTTTGTACTatgatttttattcttttttttgtttgtttgtttgtttttcatttgcaGTAGACATTCcttgtgtattgtttgtatttatttatgagtTACCCGCTGAGGACATgatggaaaacaaaaaataattactttattgAGATCTATGGAGGAATGTGCTTTTATGGGTATGAGTGTAGAAATGGATTTTGACTGAGTGACTGAGTTGAGAAAAATTAtggtaatataaaataaaaagggggtGGGGAGTACACCACCTCTGAAAACTGAATTATATAACACTAAGTGTTGTTTGAACCCCATTTCTCATCTGGTGCAATTCTACATAGCTTGAAAACAACTTGCCCACTCCCTCCCGACCCTATATTCACAGGGGGAAAATGGGAGGGATATATACAATTAGGTCCACATAGTCGATTCTGTGCctagagttgtttttttttttttgtttattttttcctttgtttttggcAAGGGAACCATTTATCAGACTAGCATCACTACATTTGTGATTCTGCAGCGCTGCATCGGGGAGGAGCTGTGTCGCTTTACGCTTGGCAtgtcattattttacattgacgaATTATACGGCTGCCTTTTCCAACCTGAATGTCCGGAGTTGCCTTCATGCTTGGGCCATCTTTCCCTACACAGGCACTAGAGGGCACCCTTTGCTGAAGCAGGAGCACAGGGAACGGCACACGCGTAAGCACAGACAGGCATGCGTGTGAAGGTGTTACGGGTCGCCATCATCAGGGTGGGTTCGGTAGTGTCTTTGTAAATTAGAAGTAGATGCAGTAGAACAGGAGATGGAGAAGCACTGTTGATCGGTGCTTTCTGTAAATAATCCCAGACCCTGTCCAGTAGAGGAGCATGTGAAGGATGGTCCCAATATGAAGGTGATTCTATCCATTGATTTAGCATATTTGCTGCATTTGTCCCTGCAGattctatttttgtttatatatataaaaaaaatgtatgtgagCAGAATTTGATTGATTTTCAAATAAAAGAGCAGCTTCCACAAAAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243733 lncRNA downstream 66668 29505559 ~ 29505986 (-) True G179913
XR_002651482.1 lncRNA downstream 483695 29042489 ~ 29088959 (-) False LOC111195083
XR_002651481.1 lncRNA downstream 484034 29042489 ~ 29088620 (-) True LOC111195083
TU243624 lncRNA downstream 484059 29012648 ~ 29088595 (-) True G179837
TU243642 lncRNA downstream 581527 28990613 ~ 28991127 (-) True G179848
TU243846 lncRNA upstream 195452 29823843 ~ 29824092 (-) True G179995
TU243847 lncRNA upstream 195836 29824227 ~ 29824519 (-) True G179996
XR_002651403.1 lncRNA upstream 258071 29886462 ~ 29904159 (-) True LOC111194987
TU243853 lncRNA upstream 275425 29903816 ~ 29905018 (-) True G180002
TU243860 lncRNA upstream 281665 29910056 ~ 29910315 (-) True G180007
XM_022681364.1 mRNA downstream 208378 29159040 ~ 29364276 (-) False robo3
XM_022681365.1 mRNA downstream 208695 29159040 ~ 29363959 (-) False robo3
XM_007231115.3 mRNA downstream 312187 29159040 ~ 29260467 (-) True robo3
XM_022681362.1 mRNA downstream 574215 28954039 ~ 28998439 (-) False pknox2
XM_022681363.1 mRNA downstream 581013 28954039 ~ 28991641 (-) True pknox2
XM_022681396.1 mRNA upstream 650705 30279096 ~ 30419086 (-) True cblb
XM_022681405.1 mRNA upstream 1049380 30677771 ~ 30733688 (-) True crybg3
XM_007247290.3 mRNA upstream 1173128 30801519 ~ 30848802 (-) False hlcs
XM_022681408.1 mRNA upstream 1173128 30801519 ~ 30848802 (-) False hlcs
XM_007247289.3 mRNA upstream 1173128 30801519 ~ 30848802 (-) True hlcs
TU243597 other downstream 721549 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 2005962 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 2005962 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 2047266 27524328 ~ 27525388 (-) True G179583
TU243318 other downstream 2048545 27523134 ~ 27524109 (-) False LOC103038646
TU244105 other upstream 1318555 30946946 ~ 30957767 (-) False G180188
TU244401 other upstream 2293904 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 2611788 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 3548372 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 5804841 35433232 ~ 35470431 (-) True LOC103042595