RNA id: XM_022681405.1


Basic Information

Item Value
RNA id XM_022681405.1
length 7029
RNA type mRNA
GC content 0.50
exon number 22
gene id crybg3
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 30677771 ~ 30733688 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAGTCCACAGTGTGGATTATCAGGCAGCGCTTCCTCACAGtatctgttgctgctgctgctcactgACTCCTCCCTCACTTCCTCACACTCCACCAAACTCACTCAGTGTGTGGATGCCCGCCGTACCAGCGCCGAGCAGCCCACACCACCCAGGCCGGCCGCCCTTACCGCGTTTCAGAGCGTTAAAATGAgactggagtttttaaaagtCGGTTTTATAACTGTGTTTTATTAGATGCGCGTCTCGCGGGGGGTTTTGGCGCCACGATGGCCAATTTAAAACGGCAGCGGTCGTGGCACGAGGACTTCTCCAGAAACTTTCTCCGACTGTTTTCCAGAAGTAGGTCTGTGGAGCAGGAAAAAACGGACACGGAGGCTGAAAATGGGGAAGAACATGAGGATGACAGCACTGTCGGCCAGTCTGATGAGGCCGACACAGCATTTGCACCTTTGCATCACCTCACCATGGAACCAGCGGCACAGACACTGGGGCAGTCAGAGCAAGACCGGCTCCTGGAGACGCACAGTGTTGATGATCCGGAGCACAGGGTGCAAGACAACGATGCAGATCGCGACCCTCTTCCCCCTCTTCCCGTCACTCCTTCTGCCCTGGAGCCCAGCTCTCCGCCGCCCCCTGTAGACGGCTTCTTCAGAAGGCTGGGCAGCCTGTTCCTATTCGGTCGAGCTGAGCCCGGGGGAGCTGACGGGCAGAGTCAGCCCGGCACGGTGTTGGAAGCACAGGGAGCAGTGGACACGCAGCACACTGACCCCAAAACACTGCTTACAGGGAGCACCGAGGCACAGACGAGTGTGGAGGAGGGAGGAGAGCAGCGTCTGAAGCCTACGGAGCTGTCTCAGTCTCAGGAGCTGTCTAACTCAGCGGCTGGTCCAGAGGTTAAATCCACAGGGCAAGCAAAGCAAGACATAGAAAACACACAGCTGCAGGAGGAGGTGCAGGCTGACCAAGATGAAGAAGGCCTAGTAGACAGTCCATCTTCAGATGAGGAGCAGGAGCGACGGCGTGCTCTAGCGTCTCCCCCTGTGGTGACGCATGTGACATATCGTGGCCTCAGGGAGATCAGGAAAATGAGGAGGAAGCAGGAGGTGCGTCTTCATTCGCCAATCTCCGAGGGAGAAGAGGGGCAGCATGGGGCTGGTGTGGGCATGTCTGCCCCAGAAGAGAAAGTGGAGACACTGCATGGGGCAAGCGCAGGCAGTCCTTGTGTGGCTGCATCTGGGGAGGGGTTAAACTATCAGAGACATGTTTCCCAAGGTTCTTCATTTGCACCTTCCAGCAGTCATATCCTTGAAGATGAAGGGGGAGTTGACAGTGCTTTGAGCCAAAGTGCCTTACAGACACATACGGTGGCCAGAACACAGCCTGCTGGTTTAGAATCTGACCTGGCACTGGTTCATGGCACCTCCTGTCCTGGTGAAAAAGCTGTTTGTTTAGTGGTTGATGAAGCTAGTGAAATGCACGTTGATGGACTGGAGCCTCTGGAGATGGCATCAGGCCGTGAAACTCAGTCCCTGTTTCATTCTGATGTTTTGCTGGACCCACTTACTGCTCAACCACTAGAGACCTCACACTCGCAGCTGTCTGACACTGCCAcagactcaaacacacacttgaCTGACATTACCACTGTCCCTAGCTCACACACATGCTTCTGTCTTGGTTCAGACATTGCTTCTAATTGCTGCCAGGAAAGCCAGCTCTCTGTTACACAACTAGATGTGCAAGACCCTGAGAGCAACCAAACCTATCTGTCATCCAAGGCAGAGATATCAGGACAAGCTGCCTGGAAGGCAGAACTTGTCCCAAAGGACGAGCAGTTGGCTTTGGATGATGAGACATTGCAGCTGGAGTCCAAGAAGATGGTGGATGACATTCTAAAAAACGCCTTAGCTGCTCTGGAGAAGATTGATGCTTCTAATCGAGAGAGTGAGAATCCCATTAGTGAGGAGCTTAATGCGGGTGCTGAGACCCTCATGCTTATGAGAGCAGGGAACAGCATGGGTGGATCAGCTAGTGTGGAGTGCATGTTcagagaacatttacctgttcAGGCTGACGGAAACCCGCAGTTGAACCTCTCAGATGACACTCTGGGTGGCCGAGCGCAGGCAGATGGTTGCAGGTCCACTCCGTCCTCAGGGTATGAGTCAATTGCTGGCTCGGACACGGACATCCGGAGCATGACCATGAACTCTGACATCAACACTTCACTTAGTGGGCCATTCGGCACATTCTGTACAGAGCCAGAACTCAAAGAGGAATCAGAGACTGAGGAGAGGGAACTGTGTATGGATGGGGGTCCTGTCTGTCAGAATGACGAAATAAGACAGAACTTTGTGCATAGCACTTTGCACCTTAAGGTGAACCTTGAAGAGAGGGAAGGACCTGAAGGAACTGAGGCAAacaatgaactattattccaatATGATCTTAGCGATAGCAATATTAGTCATAAAACAAATATCCCATCTGCACAGCAAGCCATATCGGAATCTTTATCTGGGGTAAACAAAGGGGCGGAACAGTGTGCTGTAGAGGAGCAtggagtgcatgtgtgtgttacacAAAGAGAGAATGACCATTCAGGGCTTCAGAATGCAGCCAAAGTCAATACTGAAAGCAATAACTATGGTAATGCATTGGGTTTGGACTCAGGTGATGCGTCTTCAATCATTAATAATGTAGACTTGAAGCAGGTGCAGAGTATTAGCGAACGTTTATCTCCAACAGGAATGAGGAATGTGGATTCATATCAGCTTCCTCATATCTCTGAAATTAGAGACTTCTCTGGGAAAGAGGACAGACCAAACCTGTCAGTCAGGCAAAGCCATGTGGCTGACGAAACTTTAGCACTTCACCTAGAGAAGCCCAAACTGGCTTCTCAGGATCCACAAAGTGGGCACACTCAGGGGCTGTTTAACTGTGCTGAGGAAAGTGATGAGGAGCCAGACTTTGCTCTGGTTAAGACATACTTGGCGACTGTGGTTGAGGATGGACCAGATAGTGGGATGCCCTCTGCTGTTCCAGGCTGCAGTACAATTAAAGTGTTTGTTTGTAGTGCCACAGATGACCAAAGCCAGGACCATAAGCCAGATTTATTGACAGGGCCCAGTCTTCACTCCCCAGGAAGGCTTGCATCCCTCCCTATTTCAGTCAGAGCCCACTTAGACATCCCTGGCACTTCTTCACGGCCACAAACCACTGACCTGCACCAAATCCCTGGTGGTTTTACAATCATCAGTGAAGAAGAAGAGTTAGACACTGTGTTTGTGAACGACACCGGGCCAATGCTTAGTCCCAGCACACGACGGGCCAAAGCCtacccattctctctctcccccataTATGAAGAGGAAAGCGGGCGAGAGGACACCTCACGGGACGACCTCCTGCATGTTCCCCCTGCCACCGAAGAGGAGCAGCGCAGTGTGGAGCAGCAGGCCTCCTCCATCCTCTCACTGCTGCAGTCAGTGAGTGAAAGGCTGCAGTCGTCTGTCTACAGCGAATCAGAAGACTCTGAGGAGAAGCTTGAGGAGCCAGAGAGCCCTCAGCGCTTCCTTAGGCCTCTCTGGGACCGCTACGAGGATGACGATAATGATGAAGATGCTGCAACTGATGAACAGTCAAGTTTGCTACTGCAGCAACAGCTTACAGGAATCAGACTTCACAGTGAGGAATTGGAATTGGAACCTGCAGTAGATGACTGTTCTTCTTCCAGCTTCATTCCAGACCAGAAAACTACTAGTGGAATACCGTTTGAAGAACCAGGGCCGCAGCATTGCAAACCCACtctgaataataatattaataatgttgtTAGGAAAGCTAACACCCCCTTCTATGAATATTTGAAGTCCAACATAGTGCCATCGCTCGATACAGAGAAGCAAGCAAGTAAAGCTTTTCATCATAATGAGGGAAGTCCAACATCTAGTACTCTGACGGAAATGGAAGCTTTTGGAAAGATCAATCCAAGGCCTACTTTGTTGCACATCTATGCGGGTGCAACACCAAGCGGGACAAGGAGGGATGTCTGTGAAGACGTGGAAGATGCAAGCCAAGTTCTCTTCCCACAGGAAGCCACGATCCAGGCTCGGAGAGGATGCTGGCTGCTGTATGTAGAGCCAGGATACAGAGGGTCCTGCATCGTTCTGGAGGAGGGACAGACAATGCGGACCACTGGTGAGACCACCAAAAGTGAAGAACACTCTGCTCCAGCCCTGCTGTCTGTTGGCTCCATTAAGATAGCAGTGAAGGATGACACTGTTCCAGAAATTCATTTGTCATCAGCTAGCAATCCCGAGAGAGAGCGAGTATGTCTCCACTCTGAAGCGGACCATGTGGACGCGAATGGCCCTGTCCACCTCTCTGACCTCAGTGTGCGCTCTGGCTGCTGGCTGGCCTACGATGGAACTGCATTCACAGGAAATCACACAGTCCTGGAAGCGAGAGGTTTGACCACACCCGTACTCCAGAACTCCCCCATCTCCTGTGTGAGGTCACTGCGTCCATTGAGAATGGGTGGCCTGAGAGTGAGGAACCCTCTAGACCCGAAGGTGGTGCTGTATGCGCAGCCACTCTTCCAGGGAGAGTGTCGGGAGCTGTTGGACAACACGCCCAGTCTAGGACCTGAAAGCGGGCTAGCACAGGTCTCCTCTCTACGGGTTGCTGGAGGAGTGTGGGTGGGCTACTCCTGTGAGAAATACAGGGGCCAGCAATGTGTGCTGGAGGAGGGCGAGTACAGTGACTGCTCTGCTTTCTTCAGTGAACCAGGGCTAACACTGAGATCCTGTCGCTTCCTTCAGGCTGATTTCATCGAGCCTGAAGTTTCTCTGAAGAGTTCTGGAGCGCAGATGGAGATCCTGGACCAAGATGTGGCAGAGCTACAGCAGAATGGATTGGAGCAGGGAACCGATGCCATTCATGTGAAGAGTGGAGTGTGGGTAGCGTACAGTGGTAGGTATTACACAGGAGAACAGTGTGTGCTGGAGAAAGGCCAACACCCTGGCACACTGGACTGGGGAAGCAGCAGGCAGAGCTCGCCTCTCTCCATCCGGCCTGTACGCAGGGAGGTGTGTGGAGAAGAAGAGGCCCCTAAATTTCTGCTGCGTGTCTACAGCAAACCAGGCTTCGCAGGAGAGAGCAGAGAGTTTGGAACTGAAGTGGCAGACTGTGGAGGGCTGATCCCCATGTCATTCAGAGTGATTCTGGGAAGCTGGCTGCTGTATGATGAAAAAGATTATTGTGGGAACCAGTTTGTCCTTGGGGAAGGTTTTTATCCTGATCTCACTTCCTGTGGCTGCATGACAACAGCCATCAAATCGCTCAAACCCATTCCATATAGCTTCTCGGAGCCCTCAATCAGCCTTTTCTCACTCAGCTCATTTGAAGGGCTGGAAACGGTGGCAGATTCACCCATGGAGACCATGGACAACTTCTTCACTCAGTCTCTTAAAGTCAACAGTGGCCTATGGGTGGTGTACGAGTTCGGTCAATTCAGGGGGTGCCAAATGCTGCTGCAGATGGGCGAATATCCCTGCTGGGGCGAATACAGCAGCTGGGACACCATCGGATCTCTCCAGCCTCTCAGACAGCGGCGGACGTACATGCAGGTGCGGAATGGAGCTCTAGGGATGGCACTGACCGCAGAGAGAACTTCAGACCCTCTGTCTCCAGCAAAACTCTTGCTGCGTCCTGCTGACCGCTCACTGGACACACAGCACTGGATATACAGCCAGGCTCTGCTCAAGAGCAAGGTTGGGAAGGGGTGCTTGTCTGTGATTGGAGGAAAGGCGTCTGTTGGAGCTAGAGTGGCCTTGTGGGAAGAGCATGGGCGTATACATCAAAGATGGCGCCTGAACAAGAACGGGACCATTTCCCCTCACTTAGACTTTAACTTAGTACTGGACCGGAGAGGTGGAAGTGGAATAGACAAGGACCATCTGATCCTGAGTGAGCTCTGCACTGATAAAGCCAGTCAGTACTGGGACATTGAGGTGCTTTAGTGGTGGGATTGAGAAAGTGTCCCTTCGACATTTAGCGTTGCCACGATAACGGACTGGACCATCTGAAGCTAAATAGCACTGCCTCTGACAaccaaaagaggaaaagaggaacAAACTGAAAAATGTCCAGACCAATGTTCCTCGCTTCTTCTAGTCCAGGAGAGCCATagcatgtctgtctgtctgtttctttttcaTGTTCTACAACCTCAGAAAAGAAAAGATTCTGGTGTCTTTGTGTCATGCTTAGGCTAGCCAGAACCAGATGCCAGTAATTCCACTGGTCTGAGGGTAAATAACTGTATCCAGATCAGCTGCAGGTAATCATCCTCGGGCTTGAGAACACAAAGAGCCTGAAGATAGATGCAGCAGCCCTCACTAAACCAGAGGTAAATCCTGTCCAAACTTTGGTTTTAAAGCCAACaaccaaataacaaacaaacaaaaaaaacacacactacttCCACATGTAAAACACACCATTTTTCAGTGCCAGACTAACCGAGGAGAAAAGGGCATTGTCTTTTCTTCTGTTAGAGCAATAGAAAGAGTGAATTATTTTATgcctgtatttttgttttattcatccAAGCACATTTGCACTATTAAGAttctcacttaaaaaaaacaacaaaaaaaaaaaaacaagtggcCATGCAATACAGGGGTGCATCGCCCCCTACATGCTGATATTGGTAATTGCAGgactttttctctgtttaatgATGAATTATGATGCCATGTGGAAGTTTCCCTTTActcagaaacaaagaaaaaacataagcCAACAAACACCTATTTATTCCTGTCAGCTTTGGGCCATGTAAAGACAAACCGGTCAAATCACTGGATTTATCACTGAACACAGTGTATGATGagcaaaaacaaataagatgtattaaatattgaatCGCTGTCTGATTGAAGACAGAATGTGTACAGTTCAAGTCAATAagcttattgtttttaaaagatgtcattaatattaaagatatgtAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244011 lncRNA downstream 99566 30577305 ~ 30578205 (-) True G180122
TU243963 lncRNA downstream 113034 30563822 ~ 30564737 (-) False G180092
TU243962 lncRNA downstream 113431 30563822 ~ 30564340 (-) True G180092
TU243956 lncRNA downstream 129747 30541824 ~ 30548024 (-) True G180086
TU243945 lncRNA downstream 200762 30476450 ~ 30477009 (-) True G180077
TU244115 lncRNA upstream 156980 30890668 ~ 30907924 (-) True G180196
TU244117 lncRNA upstream 177762 30911450 ~ 30919603 (-) True G180197
TU244118 lncRNA upstream 177762 30911450 ~ 30913967 (-) False G180197
TU244104 lncRNA upstream 213258 30946946 ~ 30950919 (-) True G180188
TU244139 lncRNA upstream 305328 31039016 ~ 31066380 (-) True G180217
XM_022681396.1 mRNA downstream 258685 30279096 ~ 30419086 (-) True cblb
XM_022681370.1 mRNA downstream 1049372 29572654 ~ 29628399 (-) False picalm
XM_022681376.1 mRNA downstream 1049373 29572654 ~ 29628398 (-) False picalm
XM_022681369.1 mRNA downstream 1049373 29572654 ~ 29628398 (-) True picalm
XM_022681374.1 mRNA downstream 1049379 29572654 ~ 29628392 (-) False picalm
XM_007247290.3 mRNA upstream 67831 30801519 ~ 30848802 (-) False hlcs
XM_022681408.1 mRNA upstream 67831 30801519 ~ 30848802 (-) False hlcs
XM_007247289.3 mRNA upstream 67831 30801519 ~ 30848802 (-) True hlcs
XM_022681414.1 mRNA upstream 124069 30857757 ~ 30875590 (-) True pigp
XM_022681415.1 mRNA upstream 192480 30926168 ~ 30932814 (-) True dscr3
TU243597 other downstream 1826666 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 3111079 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 3111079 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 3152383 27524328 ~ 27525388 (-) True G179583
TU243318 other downstream 3153662 27523134 ~ 27524109 (-) False LOC103038646
TU244105 other upstream 213258 30946946 ~ 30957767 (-) False G180188
TU244401 other upstream 1188607 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 1506491 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 2443075 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 4699544 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile