RNA id: XM_022681424.1


Basic Information

Item Value
RNA id XM_022681424.1
length 1126
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC111195087
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31499084 ~ 31509221 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCAAATTCCTGCTAGTTGTACTGTGTTTGATTATgcatgtaattttatttttcatttaatttttttttctttcttttttaagaaaattgtaCAGGAGAGCTTGTAGGTATGTCACTGACATCAATAGGACTGGTTATATCAGtatctttaaatatacttctgTATACAttgagaagaagagagagacagaacagagATGTGGAGGAGCCATTGTACCGAGACTATTTTCATGGCGACAGATTTGAAGATGAAGCGGTCAATCAGGATAATCCTATTTATGGAAACATCTGTATGGAAGGAGGAGGTAGGGAAAACGAGTATCCAGGCGAACCGAGGACAAATCAAAGTGTAAGACAAGATGAACAGGATGACTCAGCCGACGTCTCCTATGCCTCTCTGGACTTAACTGTGGCTCAGAAgcgaaaaaagaagagaaagtaCCAGCAGAAACAGAGCCAGACCCATCAGGCCCAGACCCATTCTGCACCCATGGCCCAGCAGAGCTGCCTGGAGACGGGCTCAGACTGCGAGGTGGCCCTCCCGTCCCGCTCCAGCAGCCTCATGGTGTCCCGCAACAGCATCTACCTCAACAGCCATCAAGTAGCACTGGAGACAGAGGAGCTGGAGAGAGAacgaaagagggagagacaaagCAATCGAGccagagagatggagataagGAATATTTACCGTGACTTTGATCACAGCCTTGGACAATCAGATCTGAGGCATGAGGACGACGTCTAGAGGCCAAAGCAAATGGCAAAAGTCTGAAAGTGTTCAGAAACTGTCGTACTGTTCGGATTCCGGAGTTTAGGTTTACTTTTATGttgctaattattttatttttcacatatTTCTTACAGCGTcatagaaatatttataattattgtaaCTGTAACTCAATTTGTACAAATTTTCATTAAATTGCATTTACTATTTATATGCAGTATTCATTCAGCAGCCTTCTTTCCATTTAACTAATTTGTTGTTGTcactaaaaaatctaaaagttcATGGTACATGCTGGTTATTTTGTCTAGTCTGTAAACAAGTTGTCAAATGTGACATATCTAAAATAAACacgtatattatattattttattaaattatattatactata

Function

GO: NA

KEGG:

id description
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244254 lncRNA downstream 75894 31422385 ~ 31423190 (-) True G180315
TU244248 lncRNA downstream 102062 31339559 ~ 31397022 (-) True G180309
TU244233 lncRNA downstream 192737 31297767 ~ 31306347 (-) True G180295
TU244224 lncRNA downstream 346147 31152546 ~ 31152937 (-) True G180287
TU244222 lncRNA downstream 378608 31119112 ~ 31120476 (-) True G180285
TU244294 lncRNA upstream 55376 31564597 ~ 31564868 (-) True G180338
TU244298 lncRNA upstream 72483 31581704 ~ 31581937 (-) True G180342
TU244300 lncRNA upstream 127126 31636347 ~ 31636548 (-) True G180344
TU244331 lncRNA upstream 233510 31742731 ~ 31742990 (-) True G180373
TU244323 lncRNA upstream 248877 31758098 ~ 31759438 (-) True G180366
XM_007247269.3 mRNA downstream 2366 31493584 ~ 31496718 (-) True timm10b
XM_007247268.3 mRNA downstream 8723 31466629 ~ 31490361 (-) True ilk
XM_007247270.3 mRNA downstream 34292 31458438 ~ 31464792 (-) True nhlrc3
XM_007247271.3 mRNA downstream 42530 31424971 ~ 31456554 (-) True LOC103043924
XM_007247317.3 mRNA downstream 157637 31325828 ~ 31341447 (-) True LOC103031187
XM_007247265.3 mRNA upstream 9855 31519076 ~ 31541475 (-) True LOC103041957
XM_015605316.2 mRNA upstream 252680 31761901 ~ 31847969 (-) True LOC103030874
XM_022680726.1 mRNA upstream 384981 31894202 ~ 32071924 (-) True LOC103030555
XM_007247264.3 mRNA upstream 581468 32090689 ~ 32096800 (-) True LOC103041448
XM_007247263.3 mRNA upstream 590980 32100201 ~ 32106911 (-) True LOC103041136
TU244105 other downstream 541317 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 2647979 28850690 ~ 28851105 (-) True G179816
TU243338 other downstream 3932392 27562974 ~ 27566692 (-) True G179578
TU243339 other downstream 3932392 27562974 ~ 27566692 (-) False G179578
TU243357 other downstream 3973696 27524328 ~ 27525388 (-) True G179583
TU244401 other upstream 413074 31922295 ~ 31934794 (-) False LOC103030555
TU244539 other upstream 730958 32240179 ~ 32262573 (-) False tmem135
XR_002651488.1 other upstream 1667542 33176763 ~ 33177497 (-) True LOC111195091
TU245774 other upstream 3924011 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile