RNA id: XM_022681442.1


Basic Information

Item Value
RNA id XM_022681442.1
length 3006
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC103027697
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33373500 ~ 33395265 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGCACGGCGATAAAGCAGCTTGATGATGAGAGATGGCGTTTGTCGGGTTAATCGCTGACCGTGGTGATGGATGTTACTCAGAGCTCTCCACACTTCGCTCTCTGACCGCTTTCTCTCTGCTCCGCCGCAGCCCTTCTGGATCCTGCCCTTCTTTAACTCGTTGGATCAGAAATTCTTCTGATACCCATCCCATCACATGGATGGCATCACAGTCATAGTTCCACCACAGCTCCCTGCACGTTCTTCAGATCAATCTCACTGTATTTTGAATGACTCAGTGTCCATCagaccacctccaccaccaccaccaccacctgccctggctcctcctcctccaccgccACCGccaccccctcctcctcctcctctatgTGGAGGTGACCCGTTCTCTCGCAGTGTCCACAGACGCTCCAGGATGCGCACCTTTAATTGGGATGCCATCCCCCGTCACAGTGTCGTCGGCAAGCGCAATGTGTGGACATCCCTGAAGAAGCAGGAGGACTTCCCTCTGGACACACGGTACATCGAGGAGCTGTTCAGTCACAGTGAGCAGCAGCGGGCACCCCGCAGGGTCGGAACGGTCAAGAAGTGCATATGGGGCCTTCCGTCAACCACTCAGGAGTCAGAAATGGTCTCAATCATCAACTCAAAGAAAAGTATGAATATTGGGATTTTCCTGaagcagtttaaaatGCCGATGCAAGACATCATTGAGGATGTGAGGCAGGGTAACATGCGTTTTGCTGCTGACAGATTGAAGGAGCTGACCAAACTGTTACCTGATGATGTGGAGTTAAAGAAGCTTTTATCCTTCAGTGGCAGTATGTCCCAGCTGCCAGAGGCTGACCGCTTTCTGTTGATGCTGGTCAAAATTCCTGGGTATGAAGAACGAATCAAGCACCTGCTCCTTAGGGAGGAGTTCAGCCCCTTCATGGAAGAGGTGACCAGCTCCATTGCTGTTATGACTGCAGCTGCTAATGagctgctgGTTTGTGATGATCTTCATTCTATCATTCGACTGGTGCTGAAAGCTGGAAACTACATGAATGCTGGTGGATACGCAGGCCGTGCAATAGGTTTCAGGATGGCTTCCCTGCTGAGACTAGTGGACACCAAGGCTAACAAACCTGGCATGAATCTAATGCACTATGTGGCTATGCAAGCTCAGCAGATTGACCGAGCTTTACTGAACTTTCCAGAACAGCTCCGGCACATCGGAGACGCTTCAAGaaTCCACAAACAAGAAGTGGAGACAGATTTTCgtagagagatggagaagatTAAAAAAGCAAAGGCCAATGCCAGTAAACAGCCTGATCTGGAACATCAAATGGAGGAATTTCTGCAGatggCTGAAAGTCGACTTGCAGCCACGGAGGCTTCTCTGCAGGAGCTGAACTCCATCAGTCACTCAGTGGCAGAGTACTTCTGTGAAGATCCTGCTACCTTTAAGCTGGAGGAGTGTTGCTCCATCTTCCACTCCTTCTGTGAGAAGTTTGATAAAGCTGTGAAGGAGAATGGTGAGCGGGAGGCTGCGGAGAAgcgtcagcagcagcagagagagagggaggcagtTAGCCGTGCATCCAAGCGCCGCTCCATCACCACCTGCTCTGGCCGCGAGTCTGATTCCGCGGTCTCGGCGTTGGAGTCCGTTTTGACCAGCTTCCTTTCTGACCGTCCAGCACGCAGGAGGCAGCCTTCTAACAGGGAAAGACCCACAGAACTGTTAAACCCCCTGGTGGAGACTTCCCAGATAGCTGTGGAGAGTCCTGCCAAGACAGAGAAGAATTCTGGGGTTTTAGATATTGAACAACCAGACCAGAATCCAgaccagagctttcagactaaAGAGGAGATCAAGCCCATTGTTGTTGTGGACTATCAGACTCCTAAAAGCAATGTGCGCAAGGCTGGCAGCCGCAGGAGCGTCCTTATAAAGCAAGACCCTGTTGATTCTGAGTGTGATTACGACAAGGACATCGACAACCAAGAGACACAGCAGAAAGAGACATCTGTGTCTGAAGCATCTCGCAAGGTTCTGCGTTACCAGACGAGCTGCGGCAGTTTAAACGGGGAACCTGCTCCAGAACACCTTGAAGACACAACCGTTATCTGGTCTCCTGCACAAAGAGAGACGCGGGATGAGGATCTGTTCTTGAACAACAATCCTGAGTGCATGGGCTCACCCTGGACCGTCCTCAGCCCTCAAGTGACCCCCAGAAACACTCCCCACCGCAGACACTGCTTCACCCCAGCCGCCAGGGACGAGGAACTAGATGACGGTGTGTGGGCTCTCCCGGACACCCCTGTACGTCATAAACCGCCTCTACTAGCAAACATGTGCAGGTCATACGAGCACAGCCTGTCCACCTCCGTGCTGACGGAAGCAGGTGTAGGATCCTCTCAGTTCTCGGACTGTCCCTCTGGAGCCCCGATGTTAAGATCTGCCTCTCTGGGTTCAGAAGCCCAGGACTCCGCCCCCGGCTTCCATTTGGGGGTTCTCTTTCACCGACGAAATGCACAAGAGCCTCCACCCTCCAAAAGGCACGAACCTTCAGCCCTGGTCTCCTTCTTCAGGCGTTTTGGAGATAGAGGAAGGCCCGCTTCCGTTGGGGATTCCCACGGAACTGACATCTAGTCTAAAACGACTAATCTCATCcctattttaagttttacattTGTCCGTTTTTAATCGTTTTACTGTTGTGTGAACACACAGACCTTCTTGTTTGACAATTGTTTGTTTCACAATGAACTCTGATTCAAGACAAATGTGGACTTGTCTTGGCAGATGTTTCATGGTGTCAGTAGTGAATCCAgaactgattatttattttctattattaacttaatttaaacctttaatagtattttaaactgttttagcCAGCTATGCAGGTTGCCTATAAAAGTGGTCCAAACACTATTACTAGTCTGctctttttgtttcttaaagCAAACTCCACTTTTATGTAataaagtgtgatttttttttatttta

Function

GO: NA

KEGG:

id description
K23958 INF2; inverted formin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244860 lncRNA downstream 55432 33317845 ~ 33318068 (-) True G180785
TU244853 lncRNA downstream 89891 33283379 ~ 33283609 (-) True G180778
TU244757 lncRNA downstream 267035 33106160 ~ 33106465 (-) True G180709
TU244755 lncRNA downstream 286745 33086525 ~ 33086755 (-) True G180707
TU244731 lncRNA downstream 337140 33036060 ~ 33036360 (-) True G180687
TU244926 lncRNA upstream 196373 33591638 ~ 33612072 (-) True G180843
TU244915 lncRNA upstream 203040 33598305 ~ 33662494 (-) True G180832
TU244973 lncRNA upstream 368135 33763400 ~ 33763639 (-) True G180889
TU244977 lncRNA upstream 399398 33794663 ~ 33794995 (-) True G180893
TU245072 lncRNA upstream 409975 33805240 ~ 33847873 (-) False LOC103033173
XM_022680729.1 mRNA downstream 5906 33303815 ~ 33367594 (-) True LOC103028027
XM_022681439.1 mRNA downstream 445747 32872810 ~ 32927753 (-) True LOC103035222
XM_022681438.1 mRNA downstream 525274 32771805 ~ 32848226 (-) False LOC103035536
XM_022681443.1 mRNA upstream 4090 33399355 ~ 33446115 (-) True LOC107197574
XM_022681444.1 mRNA upstream 131407 33526672 ~ 33746776 (-) True LOC103027380
XM_015605325.2 mRNA upstream 438680 33833945 ~ 33835554 (-) True LOC107197575
XM_015605345.2 mRNA upstream 447505 33842770 ~ 33855632 (-) False LOC103033173
XM_022681462.1 mRNA upstream 526099 33921364 ~ 33935796 (-) False eva1c
XR_002651488.1 other downstream 196003 33176763 ~ 33177497 (-) True LOC111195091
TU244539 other downstream 1110927 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 1438706 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 2415733 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 4522395 28850690 ~ 28851105 (-) True G179816
TU245774 other upstream 2037967 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile