RNA id: XM_022681443.1


Basic Information

Item Value
RNA id XM_022681443.1
length 3855
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC107197574
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33399355 ~ 33446115 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGCGAGCCGTCCGCCGCGCTCACCGCTAGGCGTTCTCCTGTGCTGCCGGGGGTTTTCTCTTTCTGACACAAACAGACAGCTGGAGCGGAGGCAGCGGGGGAAGATGGGGAGCTGCGGAGATAAAACCCCTGGTTTCTGAATGCAGCGCTCCTGTTGTTGATTTTACGCTGGTTTTTGGCCTGACAGCGCGAGGCTGCGCGTGATCTGGCTCGAACTATCCGCTAGCTCGTGCACTAGCTAATCCTGGAATAGGGCACGCGCAGTCAGTGACGCTCCAGCATGACGGACAGTATCATGAGTAAAGCGGCCACTATGGAGATCCCCATCAACAGTAATGGGGACAGCAGGACCCTGGGGGAGGACGACGGCCTGGAGCAGGCTCGAAACGTACAGTGGGGCCCCCCAGGCCAAAGGgatcTGCAGCAAGTAATGGTATCTGGGCCCAACCTTAACGAAACCAGCATCGTATCGGGTGGCTACGGTGGCACAACAGAAGGCATCATTCCAACCAGCTCTATCAAAGGCCCTGCTGTTCACCTCAACACTGAGTTTCTAGGCAACAGACGCATCCCAGTGGATGGACAAGGATCCAGCATGCACCACAGCAGCAGCTCGTCTGCGATGGCAGAGGAGGCCACAAGAGGCGTCGCAGTGGAGAAGTTTGACATGATGAAGAAATGGAGCATGAACACCTATAAGTGCACTAAGCAGATGATCTCGGAGCGTTTTGGACGTGGCTCGAGGACTGTGGACCTGGAGCTGGAGGCTCAGATTGAGGTCCTGCGGGACACGAAGCGGAAGTACGAGAACGTCCTGCGCCTGGCCCGTGCCCTTACCAACCACTTCTACAGCATGGTGCAGACGCAGCACGCACTGGGGGACACCTTCGCTGACCTCAGTCAGAAATCTCCAGAGCTGCGGGATGAATTTGGCTACAATGCAGAAACCCAAAAACTGCTGTGTAAGAATGGAGAGACCCTGCTGGGCGCCATCAACTTTTTCGTATCCAGCATCAACACACTCGTCAACAAAACTATGGAGGACACGCTCATGACCATCAAGATGTATGAGAACGCAAGGTTGGAGTATGATGCTTACAGGGCTGATCTGGAGGAGCTAAATATGGGGCCCCGAGATGCTGTGACCATGGCCCGCATCGACGCCGCTCAGCAGCAGTACCAGGTCCAGAAGGACAAATACGAGAGACTTCGCAGTGACGTCACTATCAAACTCAAGTTCCTCGAGGAAAACAAGGTGAAAGTGATGCACAAGCAGCTTCTCCTTTTCCACAATGCCATCTCTGCCTACTTCGCTGGGAACCAGCAGCAGTTGGAACAGACCCTCAAGCAGTTCAACATAAAGCTCAAACCGCCAGGAGACGACAAACCGTCCTGGCTGGAGGAGCAGTGAAAGTGCCCATACCTCCCCCTGGCCCCGCCCCTCTTTTTCCTATGACCGGTTTATTACCCAGACTGAGCGACCACCAGCCCCAGTCATGCAGTCTAGCCTGTACAGCAGCAGGGCAGCAGAAGGCTGACCATCCACTAGCAGCTGTGGAAGATGGGGGCTACTGCCTTTTTCATCCCAAacctcttctcttcctctttatCTCCTGTTTATCTCTTCCTAAAATTGTGTTTGACCACCGTGACAATAAACACAGCTTGTATCTTCAGTCATCCCAAAGGCCATCATGTTTTCAGTTTAAACAGTAGTCAACACAAAGTGTCCTGCAGGGAAAGCAACCTGTGGGCATCAATCAGAGCTCCTGTAGACCTTGAACCttgctttttctctttctctttctctcctgctctctgccTCTGAGAAGAAAGCTGTTCTCCTCCAACCCTAGTGACCACACAAAGAAGAACTTTCTTTTTTCCAACAAGATTGTCCCCGCCCCCCAAAACGCAGGGTTTGTCTTGTGGAACTGGACCTGTAGATGTGGAGAAGACTTGagcactgctgtttctgattTTTCAAAGAATGAAAGAGTTTATAGACGGGTTCTGGGGCAAAAATAGatctgtgttatttattttcataaatgtcCAGCTAAAAATATTGATACACTGTATGTTTACCATATAAACATTTGTCCTTTATCAGTCTTTATCAGAGCCTGTGATCCAGAAGGGAACATTCACATCAATAGTCATCATAGTTGATCATATTGGTACAGAAATACTTGTGCGACTTGTGGTGATTTTATATCCTGAGATTCTTGACTGAACTTCTTCATGTCAGTCTTTGaaaacaattttatttgcattgttatttgtgtcagaatattatgaccacttcCTTGTTTCTAGACGCATTGTCCATTTTATTAGCTCTATAGACCATATTGTTGCTGCAGGGTTTGTGTTCGTCTTCCTCTAGtacttctatctatctatcactgCTCACATGACTCTTTATCCtgttggctgaatatttttggtttattctctattgacactgtgtttaaaaactccagcagcactgctgtgtctaatcCATTCTATAACCAGCAcaactcacactaacacacctgcTCTTTGGCTTTGGTGATCCTGAGGGATCCTGATTAATATAGAACAAGGTGAatggaggataataaagtatgcagagaaaaaaggaagactacagtctgtaagtgtataactacaaagtgctcccaTATGGTCTGTAGAGCTGATAAATTGGATTTTGTCATCTCTGTATGTGAATACATACAAACTCTGTATGTAACCAATCTGAAATTAGAACCACATGCTTGTGTTGAGGTCATTCATTTCTAGAAATAAGTGTAATAAGTGTGCCCTCTTTTCTGTTCAGTAATATAGTTTAAGGAGATCCTGAACGTTGGAACAAAACGTTTTGGGTGCTCAAGTTTGGTGCCTGCGCTGTAATCTTAGCTCTTCAACAATTCATCTGAAATCCATGTTTCAAATTGTCATTGGAAGTATATTTTCTATACTGTATGTGATATGCCTTTGGATTTAGTTTTGTTATTAAGCTAGAGGCTTGAGAACCTGTTAGTTTCAAGACCAGTTAGGAATAGAAAAGACGGACAGAGAGGGGTAAACCGCAGTTTGCCAGTCTAAGGATGTTTGTGTTAGTTGTGGTAAATTTCTGTGGTATTATTACGTACTAATTTCcgtatgattattattttttttttggtttgtatatttgttattttaagttaacaATCAAATGTTAATCAGAACTGTAGTATATAGCTGtctttatgatttattattgtACTGTATGTGCTTTGATTAGTCCTGGCCAGTGGTTTAGACCATCGTTTATATTCTCAGACCAAAACTTGTACACTACGACGTCCTGAGAGGTTTTTTTGGTGTGGTTTTCCATTGGAATCATTGGGTTTGCCTACTACAATTCATACTGTTTTTTTGGTGTCTTTGCTTttggttttgttgttttttttatttacttaaaaccAAGAGAATCTTTAGTATGAAGAATGtatgtatttctatttttaccCCCCTCCCCCAAGCTAGTCCCCGAAAAGAACCCACAGagtaaaaaaatgcacattaacTTCCTGACTTTACGCCTACAGTCTCAGAACactaatatgatataatatgacTCATATTCTAATCAGTTCCTTgttgtttatacattttatagaaAATTTGGCAATACTTGCTAATACTGAAATTGTGACTACTGGCCGATGCGATCCAATATTTCTTccttaaaacccaaaaaaagcAGCTAAAAGCAAACTGTCATCCTCAAAATACTGAATCACTCCATGCAAAATACGCACAGTTAGTTTAATCAACATCTTGCacccttcaaaataaaagtcccttaTTGCTTTTTGA

Function

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K20314 ARFIP; arfaptin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244860 lncRNA downstream 81287 33317845 ~ 33318068 (-) True G180785
TU244853 lncRNA downstream 115746 33283379 ~ 33283609 (-) True G180778
TU244757 lncRNA downstream 292890 33106160 ~ 33106465 (-) True G180709
TU244755 lncRNA downstream 312600 33086525 ~ 33086755 (-) True G180707
TU244731 lncRNA downstream 362995 33036060 ~ 33036360 (-) True G180687
TU244926 lncRNA upstream 145523 33591638 ~ 33612072 (-) True G180843
TU244915 lncRNA upstream 152190 33598305 ~ 33662494 (-) True G180832
TU244973 lncRNA upstream 317285 33763400 ~ 33763639 (-) True G180889
TU244977 lncRNA upstream 348548 33794663 ~ 33794995 (-) True G180893
TU245072 lncRNA upstream 359125 33805240 ~ 33847873 (-) False LOC103033173
XM_022681442.1 mRNA downstream 4090 33373500 ~ 33395265 (-) True LOC103027697
XM_022680729.1 mRNA downstream 31761 33303815 ~ 33367594 (-) True LOC103028027
XM_022681439.1 mRNA downstream 471602 32872810 ~ 32927753 (-) True LOC103035222
XM_022681437.1 mRNA downstream 551129 32771805 ~ 32848226 (-) False LOC103035536
XM_022681444.1 mRNA upstream 80557 33526672 ~ 33746776 (-) True LOC103027380
XM_015605325.2 mRNA upstream 387830 33833945 ~ 33835554 (-) True LOC107197575
XM_015605345.2 mRNA upstream 396655 33842770 ~ 33855632 (-) False LOC103033173
XM_022681462.1 mRNA upstream 475249 33921364 ~ 33935796 (-) False eva1c
XM_022681461.1 mRNA upstream 475249 33921364 ~ 33935796 (-) True eva1c
XR_002651488.1 other downstream 221858 33176763 ~ 33177497 (-) True LOC111195091
TU244539 other downstream 1136782 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 1464561 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 2441588 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 4548250 28850690 ~ 28851105 (-) True G179816
TU245774 other upstream 1987117 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile