RNA id: XM_022681445.1


Basic Information

Item Value
RNA id XM_022681445.1
length 5907
RNA type mRNA
GC content 0.52
exon number 34
gene id synj1
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 33858676 ~ 33905991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTACCTGGGGGGCGGGGCTTAGTCCGCTCCCTGCCGAACCACTGTCATTCAGGGACTGTCAAACCGGCGGAGACACAACACTGCCAGGTGTAAAGCAAGTTGTGTCAAACATCAACCATGGCATTCAGTAAAGGATACCGCATTTATCACAAGTTGGACCCGCCACCCTACAGCGTGATTGTGGAAACAAGGAACCGGGAAGAATGCTTGATGTTCGAGTCTGGAGCTGTAGCTGTGCTCTCGGCTGCAGAGAAAGAGGCCATCAAGAACACGTATACCAAGATGCTGGATGCTTATGGCATACTGGGGGTTCTTCGTCTTAACTTGGgAGACTCCATGCTCCACAGCCTTGTCGTAGCATCGGGGTGCAGTTCGGTGGGGAAGGTACAGGATTCTGAAGTATTCCGGATCACAGCTACAGACTTCATCTCCCTGAAGAATGACCCGACTGATGAGGACAAAATCTCAGAGGTGCGAAAGGTTTTAAACTCTgggaatttttattttgcctgGTCCTCCACTGGAGTCAGCCTGGATCTCAGTCTTAATGCACACCGCAGGATCAGAGAAGACACGTCAGACAATCGCTTCTTCTGGAATCAGTCCCTGCATCTGCATTTGAAGCACTATGGGGTGAACTGTGATGACTGGCTTCTGAGGCTGATGTGTGGCGGAGTGGAGATCCGCACTATCTACGCCGGCCACAAGCAAGCCAAAGCCTGTGTTATCTCCCGCCTCAGCTCAGAGAGGGCTGGCACACGCTTTAATGTCCGAGGCACCAACGACGATGGCCAGGTGGCCAACTTTGTGGAGACTGAGCAGGTCATTTTCCTTGATGACAAAGTGTCTTCCTTCATTCAAATCCGTGGATCGATACCTCTGTTCTGGGAGCAGCCAGGTATACAGAATTCTGTCCAGGGAATTTTGTTGCATCTGAATCAAAGCCGTCATTCTGGCACACACAAGAAGGATGCCAAGCCACACCTGGTCGGCTCCCACCGCGTCAAGCTGTCTCGCGGCTTTGAGGCCAACGCTCCGGCTTTTGAGAGGCACTTTACAGCTCTACGACGGCTCTACGGCAAACAGGTGATCATTAACCTACTGGGCATGAAGGAGGGGGAGCACATGCTCAGCAAAGCCTTCCAGAGTCACCTAAAGGCCTCAGAGCATTCCCATGCTGTGAAGATGGTGAACTTTGACTACCACCAGATGGTCAAAGGAGGAAAGACAGAGAAGCTGAGCACTGTACTGAAACCGCAGATCAACAAATTCCTGGATGAATGTGGGTTCTTCTATTATTCTGCAGAGACTGGAATTGAAAGATGCCAGACTGGAACCACTCGAGTCAATTGTCTAGACTGCTTGGACAGGACAAACAGTGTCCAAGCCTTCTTTGCACTTGAGATGCTGCCACAGCAACTAGAGGCTATGGGACTTACAGAGAAGCCCCAGCTGGTAGCACGCTTTCAGGAAGTGTTCCGGACCATGTGGTCCGTCAATGGCGACTCTGTCAGCAAGATCTATGCTGGCACAGGGGCTCTGGATGGCAAGGCTAAGACTGGAAAGCTGAAAGATGGAGCACGTTCGGTCACCCGGACCATCCAGAACAATTTCTTTGACAGTTCCAAGCAGGAGGCTATTGATATTCTGAGGCTAGGCAGCACTCTGAACAGTGACCTGGCTGATAAGGCACGAGCCCTGCTTACCACCAGCAGTCTTTATGTCTCTGAGCCCATTTTACAATCAGCATCTCCCAGAGTGTTGCTGGGCATGTGCCAGAACCACCACAAATACACCAAGCCCAAAAAGATCCGCGTATGTGTTGGCACGTGGAACGTGAACGGGGGCAAACAGTTCCGCAGCATTGCTTTCAGAAACCAGACCCTCAATGACTGGCTGCTTGATGCTCCTAAGATTGCTGGCCACCCCGAGTTCCAGGACAGCAAAGCTACTCATCCTGTGGATATCTTTGCTATTGGCTTTGAGGAAATGGTGGAGCTGAATGCTGGCAACATTGTTAGTGCAAGCACCACCAATCAGAAACTGTGGGCAGCAGAACTGCAGAAGAACATCTCACGGGATCATAAGTATGTGCTGCTGGCCTCTGAGCAGCTGGTGGGGGTCTGTCTCTTTGTCTTCATTCGGCCTCAGCACGCTCCTTTTATCAGAGATGTTGCTGTAGACACTGTTAAGACCGGTATGGGTGGAGCCACTGGGAACAAAGGAGGAGTAGCAATACGGATGCTCTTTCATACTACAAGTATCTGTTTCTTGTGCTCACATTTCGCTGCTGGACAGTCGCAGGTCAAAGAGAGGAATGACGATTACGCAGAGATCACCCGTAAACTATCATTCCCCATGGGTCGTCTGCTGTACTCCCATGATTATGTGTTCTGGTGTGGGGACTTCAACTACCGCATTAGCATTCCAAACGAGGAGGTAAAAGAGCTGATCAGGCAACAGAACTGGGATGGCCTCATTGCTGGGGACCAGCTTGTGGAACAGAAGAACGCAGGATTGGTATTCCGGGGTTTCATCGAAGGAAAGCTTGACTTTGCTCCCACTTACAAGTATGATCTTTTCTCTGATGACTATGACACCAGCGAGAAGTGCCGGACGCCTGCCTGGACTGACCGTGTGCTCTGGAAGAGAAGGAAATGGAACTTCGACAAAACTgCCGAGGAGTTGGAGCTAAATGTAGTTGGAGCTCCAGTAAATGATGAAGAGCAGTTACCGTGGAGCCCTGGCGAGCTGAAGTACTATGGAAGAGCAGAGCTCAAGACTTCTGACCACAGGCCAGTAGTAGCAGTCATAGATGTGGACATCCTGGAAGTGGATCCAGAAGCACGACACCAGGTTTATAAAGATGTCATCGCCCTGCAGGGTCCCCCTGACGGGACCATCTTGGTCTCACTGTGCAGTTCTGGGCCTGATGACTACTTTGACGATGCTCTGATTGATGAGCTTCTAGACAAGTTTGCTAACTTTGGAGAAGTCATCCTGATCAGatttgtGGAAGAAAAGATGTGGGTGACGTTTTTGGAAGGGTACTCTGCCCTGGCTGCGCTCTCACTGAGTGCCTCCACAgtgttggGAAAGACTATAGATATCCGTCTGAAAAGCCCTGGCTGGATTAAAAGTCTAGAGGATGAGATGAGTGTGGAGAGGATCTGTGGCAGCATCCCGACTTCCGCCAGCTCGACGTTACTCGCTGAGGACACTGACATGGGAGATGAGTTTGACATGGAAGGCGATGTAGAGGAGGAGCTTGAGGACATTCTCCCTCAGCATCTGCAGCCTGGACTGGGCATGGGTCCTGGGATGTCCCCTGCTGCTTCCCCTCGCACCAGCCCTTGCCCCTCTCCCACCCACGGGGAACCTGCTCCTCCCAGCCGACCGAGTAGGGCCCCCCCACGCACAGCTGGACCACCACAAGGCGGCCTAAGTCCTGCCACATGTAGGAGGGATCTGGCAGGTTCTCCTGTGGAATATCAGGCAGCAGGACTGGAACCAAAACGCCCGCCTCCTCCACGCCCAAACGCTCCCCCTGCCAGACCTGCACCCCCGCAGCGCCCTCCACCACCCTCCGAATCGTCTGGTAGGAGAGAATCAGAAGGCTTTGCAGAGCCTCTAAACATTTCTGATTTCAGTGATAATGAAGGACAAAAAAGCCCTGCTTTAGCCAGAGCAGATGCTGCCGGACGAGGCCAACCCACTGGACCTCCGGGCGTCCCAAGGCCGAACATTCCTCCTAGAGCGGGAGTTATCAGTGTGCCACCCCAATCCCGGCCACCTCCTCCTGCTCACCCTGGAGCGCCCAGACCCATAGCCGAGGTTCACCCGGGTGCCCCTCGCCCTGCCCCAGACAACCACCCAGGAGCCCCAAGACCCATTCCGGAACCACAGGCCAAACCATCAGAGCTCCCTCTGGGTCCTCCTTCAGGTCCTCCTCCATCCATTCCTGGCCCCATGAGACCACAGATGACCTCTCCCATGCAGCCTCCGGCCACTTCCCCCATGCAGCCATCATTACAGTCCCAGCTCCCTGCACCCATTCAGCCGCAGCTGCCACCGCCCATGCTGCCCACATTAGCTGccccactgcagcctcagccggctgctgcagctgcaggtGTAGCTCCTCCCCCTCAGCCTGGCTTGGCCTCCCCCAAGCCCCCACCCCGTAGCCGCTCCTCACACGCTCTTCCTCCTGATGCTGCCACTGCCTCTGGCCCTTCCCCTGCCCCAACTCCTGCACCCACCCCTGACTCTCAGACCAATGGAATGAACGGAATCCAAAGAGAAGCACAATGGAAACCAGACCCCTTTGACTCGCTCACCTCTGACCTGTTTCCCTCCAATTCCTGGACGAACACCCAGTCCCTATCACGGAACGCCTCCCTTCACACCTcatcttcctctccttctttttCCTCCTCCACCTTGCCCAGCTCTGTCTCCTTGGATTCCACTTCTCTGTTTTCCTTGCAGAACCCAGCAGCAACTCCAGACCCCAGCGGCTTCACCTCCTTTCTGGCTCCTCCTCCGCCCTCCCGCAGCCGTTCACAAGAAACCCTCCGTGCCTCTCCGAACCCCTTCCTGTCCGACCTCCAGCCCAGGCCCAACAGCACCAATCCATTCACTGGCCCCCTGGCCACACCCTTAGCGGCAACCCAGCGCCGCTCCCTCACACCTGACTTTTTTGCTCAGCAGCAGGCCCAGGCGGCTAAGCCAGGCCTTCTCCACAGAACTGGGTCCGCCCTGGGTCATAGCTCCACCCTTCCTCCCTCCTTTTCCAGGCCTTTAGCTCCATCTCCAGTTCTAACTCCAGCTTCAGCTCCAGTTTTAGCTCCAGTTTTAGCTCCAGCATCCGCTCCACCCAAACGTACCCAGCATTGGGTGACCTTTGACGACGATTCGGACTTCAGCACATCAGGAAAAGCTCCAGCATCGACAGCAGTGACTGGGACTGCTCTGCTGTCTTTATCCTCCACACCAACATTCCAGCAGCCTCAGTCCCAGAGCATCTCTGGCTTTGACTCTCTCAGCAACTGGGCTACCACTCCTTCCACCACAGTGTTGGCATTCCCAACACTGCCCCCTCCCGTCCCAGTCAGGACTAATCCCAATGTCACCCCGAGGAACCCTTCCATCCCTGCCAGAAACAACGAGTTCACAGAAAGATGAATATTACGAcgatgaggatgatgaagatgtaaaatgtaatgctcTACTGATGTGTGCGTGGGAAAACTAGTGACATATGggtctgtatttttttgtgtatggtTTGTATAGTAGTGTGATGCTGTtttccgcaaaaaaaaaaaagtgtttgcttcTTTCAACCCAGGGCACGCCTATACAACATCCAGTTCAACACAATTACAACACTCTGACCTTGAAAATAATGGAATTGAAATAATGGTTGGCACAGAGAGACGTGACATCATCTGTACGCATTAATGAATACATAGATATGTGCACATGCAGTGTGCAAAATACTGTGCAATACTTCAGCATACTTTTCTGCATATCTCAGCGACAGATCATGTGGCACttataagaaattaagaagGAAGGTAAGAATAAAGGTAGGGAggtgcaaacaaaaaaaattgtatatgtCCCTTAATGGGAAATACTCATTTTGCATTACGTTAGATCATTACGTTAGATCTCGCTAGATCTTCAGTGGAGACCTCTGTATCCTGCAACACCTCTTTTAATGTGACCCTAACAGTTTTAAttctaaagaaataaatgaataaagctgCAGGATTCAGTTCTTCTTCAccctttttatttcatgtaattaaTTTCTCCATCATTATGAATGTATGATCAGTctgttattctttatttattttatttttttatcacccAAACTTGTGTTAACTTGGCTG

Function

GO:

id name namespace
GO:0046549 retinal cone cell development biological_process
GO:0046856 phosphatidylinositol dephosphorylation biological_process
GO:0009584 detection of visible light biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050808 synapse organization biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity molecular_function
GO:0034596 phosphatidylinositol phosphate 4-phosphatase activity molecular_function

KEGG:

id description
K20279 SYNJ; synaptojanin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244979 lncRNA upstream 10901 33805237 ~ 33847775 (+) False G180894
TU244980 lncRNA upstream 10901 33805237 ~ 33847775 (+) False G180894
TU244978 lncRNA upstream 10901 33846794 ~ 33847775 (+) True G180894
TU244907 lncRNA upstream 259321 33598348 ~ 33599355 (+) False G180826
TU244908 lncRNA upstream 259321 33598595 ~ 33599355 (+) True G180826
TU245017 lncRNA downstream 35898 33941889 ~ 33945586 (+) True G180912
TU245018 lncRNA downstream 39674 33945665 ~ 33948938 (+) True G180913
TU245029 lncRNA downstream 66953 33972944 ~ 33973145 (+) True G180921
TU245042 lncRNA downstream 99972 34005963 ~ 34006814 (+) True G180931
TU245055 lncRNA downstream 136627 34042618 ~ 34043415 (+) True G180937
XM_015605337.2 mRNA upstream 561481 33286435 ~ 33297195 (+) True LOC107197579
XM_022681441.1 mRNA upstream 561481 33286754 ~ 33297195 (+) False LOC107197579
XM_022680728.1 mRNA upstream 582990 33109991 ~ 33275686 (+) True LOC103028331
XM_022681440.1 mRNA upstream 790744 33050242 ~ 33067932 (+) True ufm1
XM_022681434.1 mRNA upstream 1149422 32704931 ~ 32709254 (+) True LOC103036259
XM_007247239.3 mRNA downstream 5233 33911224 ~ 33918735 (+) True c20h21orf59
XM_022681460.1 mRNA downstream 5828 33911819 ~ 33918741 (+) False c20h21orf59
XM_022681463.1 mRNA downstream 54965 33960956 ~ 33967651 (+) True mis18a
XM_022681464.1 mRNA downstream 102930 34008921 ~ 34123671 (+) True LOC103026520
XM_022681465.1 mRNA downstream 102930 34008921 ~ 34123671 (+) False LOC103026520
TU244438 other upstream 1584878 32272069 ~ 32273798 (+) False G180460
TU244193 other upstream 2424767 31433198 ~ 31433909 (+) True G180266
TU244158 other upstream 2707581 31139344 ~ 31151095 (+) True G180235
TU243091 other upstream 6333235 27524318 ~ 27525441 (+) True LOC103038954
TU243090 other upstream 6333287 27524318 ~ 27525389 (+) False LOC103038954
TU245165 other downstream 266968 34172959 ~ 34249814 (+) False LOC103026201
XR_002651489.1 other downstream 1910044 35816035 ~ 35836197 (+) False LOC103024766
XR_002651490.1 other downstream 1910048 35816039 ~ 35836197 (+) False LOC103024766
TU245880 other downstream 1924690 35830681 ~ 35842871 (+) True LOC103024766
TU246095 other downstream 2300576 36206567 ~ 36207895 (+) True G181734