RNA id: XM_022681478.1


Basic Information

Item Value
RNA id XM_022681478.1
length 2541
RNA type mRNA
GC content 0.54
exon number 17
gene id LOC103021309
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35075014 ~ 35164372 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGCCTCCCCACtctctcagcagcagcagcagcagcagcgcaggAGGAGAACAAACACACCGGATAACAGAGCTTTTACAGCGGCCAGGATCACGACCTGCAGCCCGGCAGCCCGGAGGAGCCTCATTTACACAGCTTTAACCTCCAGTCTCTGTTTCAGACTCTGCACTCTTACCTTTGGGACGAAATGGAGGAGCATTTCGATGAGAGGGACAAAGCTGAGCGGAAAGGCCGTGGCAGTTCGCGGGCTAACGGGCTGCCCAGTCCCACCCACAGTGCCCACTGCAGCCTGTACCGCACACGGACCCTCAGGGCTCTTAGCTCGGAGAAGAGGGCCAAGAAGGTGCGGTTCTATCGTAATGGAGACCGCTACTTCCATGGCATCGTGTATGCAGTGTCCTCTGACAGGTTCAGGTCATTCGATGCCCTGCTGGCCGACCTCACGCGTATGCTGGCCGACAACGTGAACCTGCCTCAGGGGGTCCGGACCATCTACACCATAGATGGTGCCaaaaagatcaccagcatcgaGCAGCTGGTTGAGGGAGAGAGTTATGTGTGTGGGTCTATTGAGGCCTTTAAAACGCTTAACTACACCAAGAACATCAACCCCAACTGGTCTGTGAATGTGAAGGCCTCTGCGACCTCCAGGTGTCCTCCATCACTGTCCAGCTCTAAAACAGGGCCAAATGAAGCTAAAGAGATCAAAGACTTCATCAGGCCAAAACTGGTCACCATCGTACGCAGTGGGGTGAAGCCGCGCAAAGCCGTGCGCATCCTGCTCAACAAGAAGACGGCGCACTCGTTCGAACAGGTCCTTACCGACATCACGGACGCCATAAAGCTCGACTCTGGAGTTGTCAAGAGGATTTACACTCTGGAAGGAAAGCAGATCACATGTCTTCAGGACTTCTTTGGCGACGAGGACATCTTCATTGCGTGTGGACCTGAAAAGTTCCGCTACCAGGACGACTTCCTGCTGGACGAGAGCGAATGCAGGCTGATGAAATCATCCCCCTATGGAAAAACTCTATTAAGCAGAGGATCTCCCAGGAGCGTGGTGCTGGCCAGGCACAGCAAGTCTCCCTCTGGATCAGTGAACGGGACTCCAGCCAGCCAGCTGTCCACTCCTCACTCCATGAAGTCACCAAGCCCCTCCCCTCCCAGTCCAGGGAGTCTCAAAAAGCTCAAGGGCTCAGACCAGAACGGCTCCTCTGCCTCGCTGGCCTCTACAAAGGTGTGCAGCCTGGATGAGGGCGAAGGGCCTGTCAGTGATGCCGAGCCagtggaggaaagcacagcccCTGCGGTCCCAGCTTCCATCTCCGACCGCTACAGAGTGGGACGCATGATCGGCGATGGCAATTTTGCAGTAGTGCATGAATGTGTGGAGCGCTCCACGGGCCGAGCATACGCTCTCAAAATCATCAACAAAGGCAAATGCAGAGGGAAAGagcaaatgatccagaatgaagTCGCTATCCTGCGGAGAGTAAAGCACCCTAACGTCGTCCTGCTGATTGAGGAGATGGACACCTACAGTGAGCTCTACTTGGTCATGGAGCTTGTCAAGGGGGGTGATCTCTTTGATGCCATTACCTCTGCTACCAGATACACAGAGAGGGATGCCAGCGGCATGCTTTATAACCTGGCCAATGCCATTAAATATCTACACAGCCTTAACATTGTCCACAGAGACATCAAGCCAGAGAACCTTTTGgtttatgagCACCAGGATGGAAGCAAATCTCTAAAGCTGGGAGACTTTGGCTTGGCGACAGTGGTGGACGGACCGCTGTACACTGTCTGTGGAACACCCACATATGTAGCACCTGAAATCATTGCAGAGACTGGTTATGGCCTTAAAGTGGACATATGGGCAGCTGGAGTCATCACATATATCCTACTGTGTGGCTTTCCACCGTTCCGTGGAAGCACAGAGGACCAGGAAGCTCTTTTTGACCAGATTCTGCTCGGTCAGATAGAATTCCCTCTCCCATACTGGGATAATGTATCCGACTCAGCAAAAGAGCTGATTACGTCTATGCTGCAGGTGGAGGTGGATCAGAGATACACAGCTCTACAGGTGCTAGAACATCCCTGGGTCACTAATGATGGCCTATCGGAGAATGAGCACCAGCTGTCAGTGGCAGGAAAGATCAAGAAGCACTTTAACACTGGCCCCAAGCCCAGCTGCACCACGCCGGGAGTGGATGTTATCACGCTTGACCCAGAGTTTTGCATCCAGAGATCAGGGTCATTGGACTTCTACCAGCATCCGGGAATGTACTGGATAAGacCACCACTCTTGATAAGACGTGGCAGATTTTCAGACGAGGACGCCACCAGAATGTGAGCGCGGCGCCAAGGTTTACCCAGCCATCCTGTAGCCTCCCAGCCCTTCTTCCGGCCCccagtctctgtctctccaGTCTCTCGCTCTCCAGCTGTTCCCACCTCGCCCCCCCCCGGCTGCTGCTCCACACTCTTCCCGGCCACCTCCACGCCTGAGTCTGAAGACTTTTCTGCCTGCTCTGCTC

Function

GO: NA

KEGG:

id description
K08805 DCLK1_2; doublecortin-like kinase 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245518 lncRNA downstream 4705 35068121 ~ 35070309 (-) True G181307
TU245495 lncRNA downstream 42550 35027736 ~ 35032464 (-) True G181287
TU245490 lncRNA downstream 54420 35018049 ~ 35020594 (-) True G181283
TU245475 lncRNA downstream 58358 34956188 ~ 35016656 (-) True G181268
TU245458 lncRNA downstream 129593 34914225 ~ 34945421 (-) True G181252
TU245516 lncRNA upstream 3800 35168172 ~ 35169153 (-) True G181305
TU245736 lncRNA upstream 62147 35226519 ~ 35227227 (-) True G181460
TU245711 lncRNA upstream 67961 35232333 ~ 35234658 (-) True G181441
TU245747 lncRNA upstream 119042 35283414 ~ 35316181 (-) True G181465
TU245748 lncRNA upstream 126222 35290594 ~ 35351206 (-) True G181466
XM_022681475.1 mRNA downstream 534937 34533174 ~ 34540077 (-) True rfc3
XM_007247298.3 mRNA downstream 564255 34508459 ~ 34510759 (-) True zar1l
XM_015605340.2 mRNA downstream 1073554 33987072 ~ 34001460 (-) True hunk
XM_022681462.1 mRNA downstream 1139218 33921364 ~ 33935796 (-) False eva1c
XM_022681461.1 mRNA downstream 1139218 33921364 ~ 33935796 (-) True eva1c
XM_022681480.1 mRNA upstream 5414 35169786 ~ 35180741 (-) True LOC111195093
XM_022681481.1 mRNA upstream 5414 35169786 ~ 35180738 (-) False LOC111195093
XM_022681482.1 mRNA upstream 17026 35181398 ~ 35204110 (-) True spart
XM_007229755.3 mRNA upstream 40785 35205157 ~ 35210765 (-) True ccna1
XM_007229759.3 mRNA upstream 75076 35239448 ~ 35251025 (-) True smad9
XR_002651488.1 other downstream 1897517 33176763 ~ 33177497 (-) True LOC111195091
TU244539 other downstream 2812441 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 3140220 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 4117247 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 6223909 28850690 ~ 28851105 (-) True G179816
TU245774 other upstream 268860 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile