RNA id: XM_022681489.1


Basic Information

Item Value
RNA id XM_022681489.1
length 1878
RNA type mRNA
GC content 0.48
exon number 5
gene id c20h21orf91
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35308999 ~ 35349619 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctgctgctgcttctcaatAACAATACTGTCGCCCGACCAGAAGCGCAGGAGCGGGGCTTCACTGAGAGCGTGGTCCCGAAAACACACTCACCGCTTCTCTAATCCTGCATCCTGAACTGCGCTGACAGCGGAGAAGAAGGTGCAATGGATGAAGAGGAGCATTTTGTTAACATAGACCTGAATGATGACAACATCTGCAGCATCTGTAAGCTGGAGACAGACACTGGAACATTATCTTTCTGTCATGTCTGTTTCGAGCTGAGCATAGAGGGCATTTCCACTGCCACTCTTTTGCACTCCACATCCTTGCGAGGGCACAGGGACTGCTTTGAAAAGTACCACCTCATCGCCAATCAGAAGCTGTCCCACAGCAAGGCCTCCCGTAGCACTTACGAGGGTGTAAAGCGAGCCCTAAGCCAAAGGATCAGCCGCATAGTGCAGTACGCCCAGAACAGAGACCCCAATTCCCTTGAAGCACCCGGACGATGGGGCTCCAAACACCAGCTTCTGTGCTACAGCCAGCAGGGCGACAGGAAGGTAGTGGCTCAGTCAGATGCACAGGTGCCCCGCTACGCCCCCCGCTGGACAGAGATGCCGTCTGGAGGCGAGGTGGATGAGCTGGGCCTGCTGCAGGACTCTGGACAGGGACTGTGGAGGAGTGAACAGaagcacacactgcagcagcagcagggagcAGGAGAGCAGAGGGAGCCGACGAGGTCGAGACGGCACGCTGGGCACAGCCGAGAGGAACTTCTGAAAATGAGTGTTGAAGAGCTCCATCAGCTGAATTCGCAACTGCTGTTACAGATTCAAAaggTCTTTGAAGAGCTTTCTGTAGTCGTGCAAGAGAAAGACTCCTTGTCGTCTCAGCTTCACGTGCGCCACATTGCTATCGAGCAGCTGTTTAAGAACTGCGCCAAGCTCCCCTGGCTCCAGATCGGCCGTGCGGGAGTCAGAGCCAGCAATGCCCCGGTGGAGTGAAGAGGCAGGACTTTACTCAAGAGGCTCAGACCTCCCTCCAGGCCAAGAggagcagaaacagcagcagcagcctggagTGGAGAATTTCAACTCAACTAGTGGATTACAAGACTACACACAGTCACAGCAGTGGCATGcttttcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctggtTTTAAAAGGACAGGAGTCGAGTGATGCGTTCAACATTGGAagtactttgaaaaaaaaaaacactctttaaaGGCGGTCCTGTGGTTACTATGCAGATTGAGGTCTTCAATTTTTTGTAAGGaatattttgtagtttttttttacaatcatgGCCTCAtcatcagtgtatatatatatatattatatatatataatatatatatatatatatatatatattgtattatgttGTGGTTTGTATCATGTTTAGtcgctgttttatttattgctctattgatttatttgttttttgtttagttcatGTGCATCTCTTCCGAGTTCTGCCAGCTCAGGTGggcttttttggggggggagTTTGCTGTGCTTGATGGACAGAGTCTGTTCCAGTTCTCACTACCCAGCAGAGCGTGCTGATTGGCcctggtgttgctgtggtaactGTTGCTTAGTTAAAagtggtgtgtgtattttttcccCTCACTTGGTTGGTGATCACGGCAGTGGAACTTCTTAATGAGAGCTGAGCAGATTGTGGCGTCTGCTTTACTACGAGACGCTTCGTTCTGTAGCAGACGACACAAAcatttcaccaaaaaaaaaaaaaccaaaaaacttTTGGGCTTTGTTTTTGAACCTTGAAGTGAAACAGATTTAGTTTTGCTTATCTTGGGAGTGAACTTACAGGCGACTCAAggtgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245711 lncRNA downstream 74341 35232333 ~ 35234658 (-) True G181441
TU245736 lncRNA downstream 81772 35226519 ~ 35227227 (-) True G181460
TU245516 lncRNA downstream 139846 35168172 ~ 35169153 (-) True G181305
TU245526 lncRNA downstream 150173 35156578 ~ 35158826 (-) True G181315
TU245518 lncRNA downstream 238690 35068121 ~ 35070309 (-) True G181307
TU245765 lncRNA upstream 49559 35399178 ~ 35402926 (-) True G181479
TU245767 lncRNA upstream 60800 35410419 ~ 35450392 (-) True G181480
TU245776 lncRNA upstream 114645 35464264 ~ 35533212 (-) True G181489
TU245778 lncRNA upstream 116389 35466008 ~ 35467627 (-) True G181491
TU245799 lncRNA upstream 186117 35535736 ~ 35536768 (-) True G181510
XM_022681487.1 mRNA downstream 5614 35276540 ~ 35303385 (-) False supt20h
XM_022681488.1 mRNA downstream 5614 35276540 ~ 35303385 (-) False supt20h
XM_022681484.1 mRNA downstream 5614 35276540 ~ 35303385 (-) False supt20h
XM_022681485.1 mRNA downstream 5614 35276540 ~ 35303385 (-) False supt20h
XM_022681486.1 mRNA downstream 5757 35276540 ~ 35303242 (-) True supt20h
XM_022681493.1 mRNA upstream 16666 35366285 ~ 35394225 (-) False ripk4
XM_022681492.1 mRNA upstream 16666 35366285 ~ 35394225 (-) False ripk4
XM_022681495.1 mRNA upstream 16666 35366285 ~ 35394224 (-) True ripk4
XM_022681494.1 mRNA upstream 16666 35366285 ~ 35390360 (-) False ripk4
XM_022681491.1 mRNA upstream 55135 35404754 ~ 35418511 (-) True pom121c
XR_002651488.1 other downstream 2131502 33176763 ~ 33177497 (-) True LOC111195091
TU244539 other downstream 3046426 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 3374205 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 4351232 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 6457894 28850690 ~ 28851105 (-) True G179816
TU245774 other upstream 83613 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile