RNA id: XM_022681491.1


Basic Information

Item Value
RNA id XM_022681491.1
length 6894
RNA type mRNA
GC content 0.48
exon number 13
gene id pom121c
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35404754 ~ 35418511 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAGTCGGACTTCGCTACTGGAGAACGGAATTATGGGATACAATCCGTCAGCGGCGCGCTGCCGCCATGTCTCCTGAAGATAAGCGGCGGCTAGCTTTCACCTCAGCTGCGCTGCTCGCGGTCGCTCTGTTTCTCCTGGTCCTGAGCTACATACCGACATATCTGTATATACTGCTGTTTTTCGTTGGTTTTTGTGGTGTTGGATATTATAAAGCGGAGGAGTTCCGCCTCTTCGACAGACTGGGCCTCAATCCCCGCCGTGGCCTGAGTGTGCCGCCGGCTCTGCTGCGCTGCTTGCCCGGCGGGTCTCTGCGGGGAGCGCCGGCGAGCGTCCGGAACAAGAACCGCGCCAACAAAGGTGATGCGAGGAACTCGCTAGCGGCTTCTGTGGAGCGGCACTTCGTAGGGAGCTCAGTCCAGCGGAGAGAAGCGTTCAGTGACACCGCGTTCAGCCCGCGGGACTTACTCATGGGGAGCTACCTCGCTAAGCCAGAAAGTCCCCACGGCGCGGGGAGGCCTGTCGGACCCTCCGGGCTCCAGGCGCACCCCGGGGAGCAGCTCCGGGAGAGGCTGGTCCGGCCGAACCACGGAGTCCCCACTCCGAACCGGCGGCTCTCTTTCGGAGACCCAGTAGGTACCACAGGGAGGTTTACTATCACCCCCCAGAGACATTACCCACTGCAGCAGACAGGGACATCTTCAGTAGGTGTGCTGCCTCCAGCGCAGTGGGATGGGTTCCGCAAGAAGAACGTCCTCACACAGCGCAACACTCCGACACACAGTCCGGTAACAGTGAAAATCGCCAGACCAGACAGTGCATCCCGGTCAACATTTTTTGACCAGCTAAATTCCCCTGGTGCACTAACGTCCCCTGGGTTCGGAGTTCAAGCTGACCCCTGCTCCAGAGAGACTGTGCTGAATGTGCTCAGAGAGAGCCGTAAACGTGATGTTGATGATGAAGACAAAAGCCATGCAACTGGGCAGAAGAGCAAAAGGAGGCGTCATGACAGCAGTGGAAGTTCACAGTCAGCATTTGAGACGTTACTAGCAAACGGTGCACCATCACAGCTTGTGCCAAAACCTGGCAGTTTAAAGAGAGGCATGAATACCTCTGTGTTGGAAGAGTCCACAATGAAGAGGTCACGTACATCCTCCATAAGCTCAGTGAGTGGTGCACCTACTTCTTTTGGCGTGCCAGGATCTGTCCGCAACCCCATTCGCAGTTCCTACAGCTCTTCTCAAGGCTACCCACAGCGGAGAGCAGCGTCTAGCTTGAGTTTGTCTCCTCTCACAAGCCCTGCATCATCACGGTGTCAGACTCCTGAGAGAGCAGCTAAGAAACCCAGGGAAGAGGATATCACTTCCCCAAGTTCTGCTTCATCAATGAAGTCTGATAAAACAGCCACTGACGTTGTTCCTGGCTCAGGAAAACGCAGCCCTGCTCCTGAGGCCACTGTTTCAACAATATCAGATTCTGGAGGAAGCAGTGGCAAACGCAAGCGCAAAATCCAGCTGGTATCTACACGAAGGGGAGACCAGATCTCTATGCCCCCTCCCCCTGAGTTGGGCTACACAGTCACTGTGAAAGACCTGGACATGGAGAAGAAAGCTGCTCTCAGCCAGATCCAGAAAGTTCTTGAGGAACCTGAGCCAGAGAAACCTGCACCTGCCTCGGCTCCAGCCCCTGTTCCTACTCCCTCTATCAGCCTGTTCTCCCAGGTAGCTCCAGCCTCTTCAACTGCAGCCAATCCTGGTGTGAGCGCTCCCTCTGTGGCACCTCTCTCTGCTCCTGCAACCTCCACCACCATCTCTGCCCCAGCTCCAACTCCCACCATTGACCTCACTGTGGCTCCAGCCAGCACAGCCAGTCCTGCAGCGACTCTTATTtctgccgccgctgctgctgccaccaccaccaccagcagcaccctAGCAGCCCCAGCCATGAGCCAGGCTAACCCCCTACTGGAGTCCCTAAAGAACATGAGAAACAACTCCCAGCTCCCCTCTCCCCTGGCGGCTACACCTGCAGCTCCAGCAACACCTGTGATGGCAAAGACTCCTGCCTCGCTTGCCCAGACTGGTCCAGGATCTGGAGTCTTGAAGTCAGAGCCTGCTCTTGCCCCTCCACAGCCCTCTGTCTCAACTTCTCTTGCGCCAGCTACCCACTCAGCAAGCTCCACACCCTCTGCCTTTGCCCAGATCCTGGCCCAGCCACTGCACCCCTCATCTATCACCTTTACTCCTCCATCTGGGAGCACCCTCTTCAGCCTTAAGCCTCAGACAGCCCCTGCATCTGCTGCACCTACACCCACAGCATCAATTACACCTACAGTGGCTGTAAGCAGTGCAGCTAACCCTGCACCATCTGGGTTTAAGCCTATTTTTGGAGCCGCAACCACTGCGCCAGCCACAGCGGCAGAAGTCAAACCCACGCAACCTGTTTTTAAACCTATTTTTGGCAGTGCAACTGAAGGTGGTCTAAGTGCGTTTGGTCAGCCAACTACTACAACACTCTCCTCTGCACCTGCATCTCAGAGCTCCACATTACTTTTCGGGAGCTTGATCAACACCCAGCCGGCAGCTGCCTCAGTTGCCTCGTCCACACCCACCACCCAGACTTCCAGCAATTCTCTGTTTGGAAGCTGGCcctctgcttctgctgctcctgctccagctcctgctgTAAACAGCACCTTTCAGTTTGGAGCACAGGCAGCAGCAACACCTTCCTCAGGACTTGGTGCCGCCACCACCAGTAGCAGCGGCAGCGCTAACATGTTTCAGTTTGGTGctgtaaaacccacacagactgCTCCCGCAGCAGCTACTCAGAGCACATTCATGTTTGGTCAGACTCCTGCTGCCCAAAACTCCACCACAACCACATTTGGAGGGTTTGGCCTGACTAACAACACAGCCACAACAACAGCCAGTGCCCCTACGACCCAGGCCACTTTTGGTAGCTCCACGTTCAGCACATCCACATCCTTCCCCAACGCAACCACTCAGGCACCTGCTGCAGCAAAGCCTTTCACGTTCGGTGCTGGGAGTGGAGCAAGTGCGGCAGCAGCCCCATTCCCATTTGGAGCACCTGCTAGCACAGCAGCCCCTTCCTTTGGGACTCAGAGTCAAACTACATTTGGCAGCACCACGGCAGCACCTACTTTTGGGACTCAGAGTCAGCCTACGTTTGGCGGCACCACAGCAGCTCCTAGTTTCGGGACTCAGAGTCAGCCTACGTTTGGCGGCACCACAGCAGCTCCTAGTTTCGGGACTACAACTCAACCTACGTTTGGCAACGCCTCATCTGGCTTCTCTTTTGCAAACACCACCACCCCATCAGTGGCTCCAGCCTTTGGGGCCACCACACAGACTGCTGCCCCTGTTCCAGCTCCTACCTTTACATTCGGAGCAGCCTCAGCCACCCCACAGAACAATGCCCAAAGTGCTCCTGCCCCAGCAGCTTCTGGAGGGTTCAATTTTACCGCATCGCTGTCCGGAGCACAGTTTGCAACACCTGCGCCCGCAGCTCAGACTCAAGGTTTCCCATTCGGGAATAACAATGCGGATAACAAGCTCACTTTTGGAACATCCACCCCTGCATTTGGCAATTCAAGCACGCCTATCCCATTCGGCAGTCCGGGCACTCCTGTACCGGGATTTACTGCCTCGCCTTTTAACACTCCCTCTGCCACCTTCTCGATTGGTGCGGGCTCCAAGCCCAGTGGGTCACGGCAGAGGCTGCAGGCACGTAGGCAGCACGTGAGGAAGAAGTAACACTGACCAGAGGTCTGTCATTCAACCTCATAATGTTCATTAGGACAAATGCAACGCTCCTCACGACTAtcccagctgctgctgctgctacgaCCACCATTGCTGCCGCCAACGAGACGTTATCAGGCTTTCCACAGGACACATCTGACCAAACTCAACTGTAGAGTGCTGTAGTCAGTTAGGGCTGGTCAGATGTTAAAAGAGAACAACTGGCGATCCTATTCCTGGACCAGAGCAGGAGAGATTGAACTACCCAGATCTTCCTGTGTGGAGTCAGACAAATAAGTGACGTGAGGCGAGTTTGGACAAACGTTAAACGTACttgacaaattaaaaacctaGACGTAAGCGTGAATGTGACGTCCAGGCCAAAAGAAACTGAATCTGGTTTTGACTcacatttgtgtttgttttcaggGTTTTTGTGTTAGTTtgggttttttgttttaaaaaagctaGCTGGCCATTTAACCTACATTTTATGTGATCAGATCCATGTTACATTAAACGCAGTGAATCCTATTTTTTTAACTTCTGCTATAAGTAATCCAACTTTCAGCAGTACAACagtactttttatgtttttgatcTTTGACTGAAATGCTTATTTGGGTTGTCTATGTTGAACTTCTACATGACGTTCTCGAAGGTAACCAACCTGCTGTTTATGTTGGAACGACTGAAAGATGTTCTTCTTTACCTGAATGCACTGAGTTGCAAAATAAAGTTTTCATTGCTTTTTCTGACAAATccctttaaacaaaaaaaaccaacTGATTGGATTACTTATGTTATGCAGGGTAGATCCTGCTTGTGCTCACTTGTCGTGTACATTAAAATTGATATGTTTAAACCAAAGCAGATgatttagtgaaaaaaaaaaccctctttGTTTATTGGCCATTTGACTACCTCTCCTGTTTTGAGCACCTAATTCCAGTAAATGTTACATACCTCTCCATTAAATCAAGCTTTGATTTGGGCTTAAAGATCCTGTGCTGTGTGATTGgaggtttttaattgtttagaattaaattaattgtgtaaaattTATATTCTGAAAGCATTGATAGATCAAGCCTTATTTGGGGTAAAAATGTCTTTCTTTGGccgttatttgtttttttttttaaagcttcttCTTCCTTTACGTTCAGTTCTAATACCTTACTTATAGTTCAGCTGTGGCCACAATAAACCTGATGGGCTGTTTTAGGAGCACAGGTTGATTACAATCTCTGATCTGTTTTATCTGTTCACTTCATTATTTCACAATCATGTCTGGATCAGGCATAATTCACTCAAAGCATTTCCTAAGGTGATCTGAGACTCACTTAAGCCCTGCTATTGCAGAGTAGATGCATTCATCTCTAAAAGCTGCATTCAGCAactaaaactcctcccagtatatacaactaaaacacctgtaatGGGCTGGTTGCTGTTAAGTACGATCAGGGGTTAACAGTGTCTTTATTCTGGCAATGCCATAATATTTATTGTGGCTGGCCATGGGCTACAGGTTCAGGGAATCTGACAAAAAAGGAAGCATaattcagcttttatttaaatcaaCAAGTGGTGATCTGTTAAGAGTATTGCTTTGAGCTCACTGTGGCTTTAGAAAGCCTTCTCCTGCTTTTTCAACTAGTATGGCCTTTAGATGCAGGTTCAACTCAGCACACTAGTTCATTGCATCccttttgttttctcatttttattgttttatttcttgtgtgTGCCTTAGTGCATCTGAATGCAGATTGTGTGCTGTGAATGATGTCAGATCTGTTTAATCTGTAATGGGTGTACTTgaaagttaaacaaaaaaaggctCAAATAGAAGATAATTGACAACAAGCAATATGAGGGCCTGTTTCCCAGACCATGAGTAAGCCTAAGCCTAGACTACATGGTAATTCATCATGAGCATTGCAGCATTGCAATTTATTCTAAGAGGAGATCAACTTGTATTCCATGTAGGGGGAATCTTGCCCATATAATATTCACTTCTGTTTGACTACTTCTGTTTGGCTAAATACTGATCTCAGGGGTTCGGTCCATTTTAATAATGGTCTCTGAATTTCTTCAGAGCTTGACTGAGTGAGTGACAGCAAAAATTTTATAACCACGTGGTTTGGAAGGTGTATGAAAATGGTAGACATGATGCCAAAAGTGCTACAGAAATTAAGTATATGAAACCACAAGGAGGGCTGCTTTCTCTATTTATTAATGACATACATTTtctaatttcagttaaattcatgagaaatgttttatttgaaatCCAAATTTGAGAGCAGTATTTTGCTTTAGACTTTATTTTGCATGCACTCTCTATTTAAGACTTAGCTATGTACCTATGTATGCTAAAATATTATGTTCTGCTAATGTTATGGTATTCAATACTACTGTCATTCATTCCTTCAGGATGGTCAAAGTTCAGAGAGCTGAATTGATGTGAGCAGTCTTGAGTTGGCCACCTGAGCCCCTTACAAAAATAGTCCCACAGTCTTATCCAAGATACAACTCTCAGGtgtattttcagtgttttagtttagttccttTGTTTTATATTCAGCTAAACCCATTTAGATTTTGCTTTTCCTCACAGAGCACATTTTAGGATGCACAGAATTGGAAGCACAAAACCCCCACCCCATACATTTCATCTTACCTAGGTAAAATCCCACGTTAACTTACTGTACCCATTGTGTTGTCCCATGAGTGTGGTCCCCTTAgtgtggtattttttttttgtgtgagtcTTAACTTGCTGCAGTTTGTAAATAAGATAAGTGAAGTTTCTGTGTGATTGGTATAGCAGCAGGGGACCAGGCTTTTCATTGTTATGGAGCCCTACCAAATAAACTGAACGTATTGGACACATAGACTGTTGAATAAATATGATGTATGTTGAGAGCTGGATTTCTCAAGCTGTGAGTGTCTGGGAGCTGTTTTGTGCATTacgattgttttttttttctggatgttttGCTGTAAGTGTTTTCTGATGGCAAGTTTGCTGGAGTGTGTATTAAGACTGTTTTTATGAAagagtatgagtgtgtatggCCGGAGCAGCGTATTAGAATAAACCCTGTGTCTGCTCAG

Function

GO: NA

KEGG:

id description
K14316 POM121, NUP121; nuclear pore complex protein Nup121

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245765 lncRNA downstream 1828 35399178 ~ 35402926 (-) True G181479
TU245748 lncRNA downstream 53548 35290594 ~ 35351206 (-) True G181466
TU245747 lncRNA downstream 88573 35283414 ~ 35316181 (-) True G181465
TU245711 lncRNA downstream 170096 35232333 ~ 35234658 (-) True G181441
TU245736 lncRNA downstream 177527 35226519 ~ 35227227 (-) True G181460
TU245776 lncRNA upstream 45753 35464264 ~ 35533212 (-) True G181489
TU245778 lncRNA upstream 47497 35466008 ~ 35467627 (-) True G181491
TU245799 lncRNA upstream 117225 35535736 ~ 35536768 (-) True G181510
TU245808 lncRNA upstream 155419 35573930 ~ 35574384 (-) True G181519
TU245819 lncRNA upstream 180013 35598524 ~ 35598765 (-) True G181529
XM_022681493.1 mRNA downstream 10529 35366285 ~ 35394225 (-) False ripk4
XM_022681492.1 mRNA downstream 10529 35366285 ~ 35394225 (-) False ripk4
XM_022681495.1 mRNA downstream 10530 35366285 ~ 35394224 (-) True ripk4
XM_022681494.1 mRNA downstream 14394 35366285 ~ 35390360 (-) False ripk4
XM_022681489.1 mRNA downstream 55135 35308999 ~ 35349619 (-) True c20h21orf91
XM_007229766.3 mRNA upstream 16617 35435128 ~ 35470789 (-) False LOC103042595
XM_007229767.3 mRNA upstream 53575 35472086 ~ 35477772 (-) True smg8
XM_022681498.1 mRNA upstream 61784 35480295 ~ 35488505 (-) False prr11
XM_022681497.1 mRNA upstream 61786 35480297 ~ 35488505 (-) True prr11
XM_022681505.1 mRNA upstream 123808 35542319 ~ 35552188 (-) True rhbdd2
XR_002651488.1 other downstream 2227257 33176763 ~ 33177497 (-) True LOC111195091
TU244539 other downstream 3142181 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 3469960 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 4446987 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 6553649 28850690 ~ 28851105 (-) True G179816
TU245774 other upstream 14721 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile