RNA id: XM_022681493.1


Basic Information

Item Value
RNA id XM_022681493.1
length 5267
RNA type mRNA
GC content 0.47
exon number 11
gene id ripk4
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35366285 ~ 35394225 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACAACTTAAAAATTAACTTTGTATATAAGGAATTGTAATAAGGTGAATTCTCTCATATAAACTTATGGACAATTTTGAAGGCTGTTGGTTTTGGTACAGAGGGGAGATTAGGTTCAGCTATATTAGTATAGTAACAGttatttgtataatatttgGTCGATGACTGCATTAGGACTGCATTAGGGGAAGGCTCGGCTGCTGCTGCAGAGAGCAAGACCGTTAGTAACCACTAAAACTGAGCTAAAATAACCTAAACTAACAGATAACGGCTAACATTGGAAATTTAGCCTTGTAATCTTATTACAATTCCTTATATACAAAGTTAATTTTTAAGTTGTTGCAGAACCAATATAGCTACCTATCATGCCTGAATTTATGGcaaattaacacattttaatgacCTTTAACCGTGTTTAAACTTCGTAAGTTAGCTAACCTATTAgctgctaactagctaaatttAACTAACGTTACCCGAGCTAGTTAGGGTCAGGTTCACGGGACTAGCGTCCTGAGGTAAACTGATAACGCTAGGTAAACTAACTTGCTATATTTCCAGATGGACTCCAGATggatttcacacttttatttcgGAGGTCTTGCACATTTGAGGATGAAGAAAGAAGCTGGAGAAGACTAAAGGGGCATGTCTGATCAGGTGATGTTACATTGGGTGGATGGTCTATTGGTGCCATTTGATTTCTACTGAAAACAACTGATGTGGATACTACCAGGACGAAGAAGGAGCCCAAACAGGAGTCTTTATCTGGCAGCTTTTAAGATGGATGTTCAAGAGAGCTCCCCAGGGGTCATGGGGTCGCTGAAAACGTTTGACTCTTCTGAGTTCGGGAGCTGGGAGAAGATTGGATCTGGCGGATTCGGACAAGTGTACAAAGTACGGCATATGCAGTGGAAAACATGGCTGGCCATAAAGTGTCCTCCCAGCCTTCATGTGGACGACAAAGAGCGTGCTGAGCTCCTGGAGGAGGCCAATAAGATGGAGGCAGCAAAGTTCCGCTACATCCTTCCTGTGTACGGCATCTGCAGCGACCCGCAGGGCCTGGTGATGGAGTACATGGAGACAGGGTCTCTGGAGGCTCTGCTGGCTGCTGAGCCACTGCCGTGGGAATTACGCTTCCGCATCATCCATGAAACTGCAGTGGGCATGAACTTCCTGCACTGCATGAACCCACCTCTGCTGCACCTGGACCTGAAACCTGCCAATATTCTGCTGGATGCCCACTATCATGTCAAGatcTCAGACTTCGGCCTGGCCAGGTGGAACGGCTTTGCTCGAAATGATGACATCAGCCGCGACGGGTTCTGCGGCACTATCGCCTACCTCCCTCCTGAGAGGATCATTGAGAAGGACCGAGTCTCTGACACCAAGCACGACGTGTACAGCTTTTCGATCGTTATCTGGGGAATTCTCACACAGAAGAAGCCGTATCAAGGGGAGAACAACATTCTGCACATCATGGTGAAGGTGGTTAAGGGAGTGCGTCCGGAGCTGAGCACCGTGCCCCGCAGTCGACCTCAGGCatgctctggtttcatggccCTCATGCAGAAGTGCTGGAGTGCCTCTCCAGATGAGCGGCCCAGCTTTCAGGAGATCACATCCGAGGCTGAGGAGCTGTGCTCTAAACCCCACGATGAGTCCAGAGTGTCAGTGTCTGAACCAGATTGTTCTCCCTGCGCGGCTCCACCAGCCTCTGAACAGCCTAAGGAGCAGAAGCCTGTAAGGCCGAAGTCAGCCATGTTGCCAGAGAAAGACTGCAGCCTCTCTGAGCTGCTGAGCCAGATCGACTCCGGCATCTCCCGCAGCTTTGACCAGGTTAAGGAGGACTGTCTGGAGAGCAAGGACAACACCAGCAAGAGACTGTCGGGTATTTCCTCTGTGGACTCTGCCTTCTCCTCCCAGGGCTCCATCACACTCTCCTTTGAGAGAGAAAACTCTAGTAATGaATCAAGTGAACTGCAGAAGAAAAAGCTATGTGATGCCATCCGGACAGAGGACACTGCCAAACTGATGAAGATCCTTCAGCCACAGGACGTCGACCTGCTCCTAGATGGGGGTGGCAGCCTGCTCCACTATGCTGTGAGCCTGGCCAATGAGGAAGCAGTGAAGTTCCTGCTGCTGAACAACTGCAGTGCAAATCTTCCCGATTCTCGTGGATCCACACCCCTCCACTTGGCTGTTGAGAAGCGTCTGAAAAGTGTGGCTGAGATCCTTCTGGGACGCAAGAGCACAAATGTGAACGCTAAGGACGAGGACCAGTACACGCCTCTGCACTTTGCTGCACAGAACGGGGACGAGGCGCTTACTCGGCTCCTCCTCGACCGTGCCGCCACCATGAACGAAGCGGATGCCCAGGGGCGCACACCCATTCACGTGGCTTGCCACCACGGTCGGGAGAACGTGGTGCGTGTTCTGCTGAGTCGTGGTGCTGATGCGCATGCCAGAGGCAAAGACGAGTGGACAGCTCTACATCTAGCTGCATGGCAGGGACACCTTGGCATTGTTAAGCTGCTGGTTAAGCAGGCTGGCGTCAACGTGGATGGGCAAACAGTGGACGGGCGAGCTCCTCTGCACCTCGCCTCGCAGAGGGGACAGTACAGGGTGGCACGTGTTCTAGTGGATCTGGGGGCAGACGTGAGCATTACGTCCGCTTGCCTGAGCACACCGCTTCATGTGGCCGCTGAGACCGGTCACACCAGCACATCCAGATTGCTTCTCAAACACGGCGCTGATATCCAGTCCCGCACGGCCCAGGGCCTCACGCCTCTGCACCTAGCTGCCTGGAAGGGTCACCAGGCCACCGTTAGGATGCTTCTAGAGGAGGGCGCAAACCCACACGACACTGAGCACCTCCTACGCACACCTTGCCACCTTGCTGCAGAGGGAGGACACTGCCAGGTCATGGAGGAGCTTCTGCAGAGATGGCCAGAGGCAGTGGCCACGCCGGATGAAAGCGGATTAACACCGCTGCACATAGCCGTTCGTGGTGGATACAGGGACGCCATCTGCCTCCTGCTGAGCCACGGTGCTGACAGCGCTCCACCAACGCCCAGAGGCTCTGTGTCTGAGCCACCCACACCCACAGAGAACCTTACCACTCAGATATCTGGTACTCTACGCAGGAAAGTGGTCATCCTGAAACTCGCTGAGCAGGAGCCAAGCCAGGACTCCACAGAATCAATGTGTGCAGTTGCTCACTGCTGAGATAAAATGGGACAGCAACCTAATAGGCTGTAGAGTGATTTCCCTCTTGaggactttctttttttaacctttGACACTTTATCAAAGAGCAGCATTTTTAAACCTAAATGATGTTAACAGTACATAAGCCTTACATGAACATAAATGCATGATGTCGGAATAGCTGAAATAGCTCTGTTGTCATGAAAGGCTTATGTAGACGTCACATGTAAAGGGAAGTATAGCAACAGACAAGTTGTCTTGTACTCCTGATGTGCCTTTTTAAAGTCAACTGTCATGGCGGTAACTCTTATCCTCTTTACTGATTCTCGCTGTGGTTTAGCCTCTATTGCCGTAAGCTGGGCTGTGCATTTACAGGGAGTTGGCCAGGCATTGCATTTGCATCCTTGTGTTCTGAATGTTTCTGGCCCTAGTCACTGTCATAAGAAAACCTCCTATCTATGAAGTGACAACTTTTTGACAAGAAGTAAATCTGAGTATTCCAGTCGTTTTGACCTTTTTTCATCAATTGTAGGACCAGCCCATTGACTTAAAGGGGTCTTTCTGTTCTTTCTATTAACAACTTAGAAAAAAGGCAATTCAGATCATTTCTGTTGGTCTATTTATCGCGAAATGAAAATATACaactacaaatatatatataacaactgATGGTTTCTAAATATTGTACAGATTTTCTTGTGATATATGATGTATTATGTCATTATTGCTCATTATAgactaaaagaaagaagaggGATTTCATGCTGTTTCTGATGTctgtatataatgtaattaataatatatggtTGCGGTCATTACAATGTAGTTACCTCTCAGATTTCCATGGACTTTGAGCTCTGAAAGACTATTCCAGCAGTAATGAACATATTTCTGAATGGGAAAGGGCCATGTATATAACTGTACATAGAAACATTAGAAAATACACTTATTATTGCTTTAACTTCCTCATTCATTATTTGCTTCTTTTTACATGTATatgtttgtcctttttttttttttttttttttgccatatgtcatttattttcctatttGTGGCTTATCTCTGTTGTTGCTTTCCAGATCAGACCTGTAATTCATGTAGCCTCCAGGCAAACTTCTCCTACGTTTTTCTACTTTATGCTTGAGTGCATTTTTATAGGAACAAGCAGactgcaaaaaaatgcaatcttaaaatcttaaacGTGTTTGCTCCATTGTGTTAGCTCCTACACCATTACCCCTATACTTTATATTCTTATATCTTTGCAGTATTTCCAGGCTTTTCCAAATCCTAAGGCTAATTATACTATTTAAAGAAGCTTTGGTGTGTTATGACAGACAGGAGCGTGTGTAGAACCACTTGGCTCACACCATGGGAACAGGGCCTGGGGGGGATCACAGGTGCTGTATGGATAGGGAGTAAAGGGGGGTGGGGGGCATGGGGGCGGAGGGGCGGTGACTGTACACTGTGAATACCCTCATGTCAGGGCTGTTGGCCAATTCCTGTGACCACCTTATCTTTTCATCACTCTGTAAAACCACAGAGCCGTGCCTTACTGACGCCACATGAAGCACAGCTTTCACAACCCCCCCAATTTGAGACGCTTGGAATGGAACTGCCAGCTCCTTAATTGCTAGGTATTTACATTCCCTGTTTGCGGAGAACCACTGAATTGACTGGTAAGCTCTGTGTGATGAGAGGCTTAGTGTAAATGTGTAgtgtatgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgattcaGTGAGAGTGTATCGAGGTAAAGACATCTCTGCATATGTGTTTTTTGTAGCGCTGGTTAATTCTCTGCTACATGATCCAGCTCTGTACTCGTAGTTCTCAAGTAGCATTAAGCACATCGTAGTCCTTGTGTTTGACCCTCCTGCAGCATTGCTTTTACATTCATTTGCTATTAggtcatcttgtttttttttgtatgcagAGTTCTTTCTATGTACCTATAGTGTTTGCACAGTTTCACTTTTGTATTTGATGGAAAATTAAAGTTCATCATGTGCCTTAAATGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245748 lncRNA downstream 15079 35290594 ~ 35351206 (-) True G181466
TU245747 lncRNA downstream 50104 35283414 ~ 35316181 (-) True G181465
TU245711 lncRNA downstream 131627 35232333 ~ 35234658 (-) True G181441
TU245736 lncRNA downstream 139058 35226519 ~ 35227227 (-) True G181460
TU245516 lncRNA downstream 197132 35168172 ~ 35169153 (-) True G181305
TU245765 lncRNA upstream 4953 35399178 ~ 35402926 (-) True G181479
TU245767 lncRNA upstream 16194 35410419 ~ 35450392 (-) True G181480
TU245776 lncRNA upstream 70039 35464264 ~ 35533212 (-) True G181489
TU245778 lncRNA upstream 71783 35466008 ~ 35467627 (-) True G181491
TU245799 lncRNA upstream 141511 35535736 ~ 35536768 (-) True G181510
XM_022681489.1 mRNA downstream 16666 35308999 ~ 35349619 (-) True c20h21orf91
XM_022681487.1 mRNA downstream 62900 35276540 ~ 35303385 (-) False supt20h
XM_022681488.1 mRNA downstream 62900 35276540 ~ 35303385 (-) False supt20h
XM_022681484.1 mRNA downstream 62900 35276540 ~ 35303385 (-) False supt20h
XM_022681485.1 mRNA downstream 62900 35276540 ~ 35303385 (-) False supt20h
XM_022681491.1 mRNA upstream 10529 35404754 ~ 35418511 (-) True pom121c
XM_007229766.3 mRNA upstream 40903 35435128 ~ 35470789 (-) False LOC103042595
XM_007229767.3 mRNA upstream 77861 35472086 ~ 35477772 (-) True smg8
XM_022681498.1 mRNA upstream 86070 35480295 ~ 35488505 (-) False prr11
XM_022681497.1 mRNA upstream 86072 35480297 ~ 35488505 (-) True prr11
XR_002651488.1 other downstream 2188788 33176763 ~ 33177497 (-) True LOC111195091
TU244539 other downstream 3103712 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 3431491 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 4408518 30946946 ~ 30957767 (-) False G180188
TU243597 other downstream 6515180 28850690 ~ 28851105 (-) True G179816
TU245774 other upstream 39007 35433232 ~ 35470431 (-) True LOC103042595

Expression Profile