RNA id: XM_022681497.1


Basic Information

Item Value
RNA id XM_022681497.1
length 1728
RNA type mRNA
GC content 0.42
exon number 10
gene id prr11
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35480295 ~ 35488505 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGGAAGTATTTTTGAAATTagtgaacagcagcagctgcaggaaTGGCTGGATTCGGGaGACTAAGCAGAGTCTTCCAGAGGACAAGAAAAAAGTCCTCTTCCAGTCGACGCTGGGCTATAAAGACCAAGAAACCCACAACTCCAACATCGGGCAGTCCAGTAGATACACAGAGTAAATTGAATCTAAATGACAAAACCAAAGTTGAGACTGCTGTGGTGCCCAGTGGTCAAGAAAGTGGAGTCTTTCTTTATGTGCTTGGAGGAATTGTGCATCAGTGCCAGCACAGAATTAGTCAAATCTGGAGCGGATTTTGGAACGTTTTTCTTTTCTGGAGAGCTTATTCTCAGAGAGTGGAGATTCTTCACCAGAAAGTGGACTCCCTCCAAAGGGAACTGCAGCTGCTGCAATCCAATGGGGTGGTAAACGGTCCAAGAGGTTCTTGCTGCCACTGCGTTCTATCGAGAGACAGCCCTGTCCTGCAACAGCATCAGCAGAGCTCTGTCGATCCACTTACTGctcttcctcctccaccaccacctccacctccatctctgcctcctccacctccaccactACCCCCAGCTAAGAAGACTCCCCAAAAACTGTCTTTAATTCCCAAAAAGAGAACGATTCTCACTGCAGTGCAGGAGAAAATAGATCGTCGAGTTGCGGTGACTCTCAAGGACCTACAGGCTGTGCAGCTGAGAAAAGTCACTGTGAATCGTAAAGTTCTGGTCTCTCCTGAAAAGAAACAGGTGCCTCTGATCACACTAGCTGATCTACAGAAGGTCCGTTTAAAACGCACTCAGTACAGAGTCCCGTCACCACTGAGACCCAGCCTTGCTAGgtcaccaaacAAAAGTCCTGTAAAGCTTCGGGCACATCTTAAAAAAGTCCACATCAAccaGACTCCAGGCAGAAGCCCACTGTGCAATAAAGAGAATTTAGAGGAACTTTTCAGAAGCGCAATTGAAAACTAATAAGCACCAGATTGCTTTGTCTACCACACCCTAACCACTGAAGCCTGTCAGCTGAGACTGATATCAAGAGATTAGCCATTTAGTGTTTTACTCCTGCTGCTAATGTATCGCAGTATTGCACGttattgattggttggtttacATTGATTTATTGGTTTAACATTCAGTTTTCTACAATTATAAGACTAGTGTAAGGTAAATATGGGCGATTAGAGAAAAGCTGCATTCCAATGTGTAGGTTGACCCACAAATATGACGTGATGACTATCAAGCGTGAAACTGCTTTTAAATTTCTTCGTAGAAATGattttgaaattaataaaaaaacattttaaatggactttttttcctttttctcctgCAGTGTACATGCAGCAGTGAATTGTGGTTTACTGATAGCCATGCATTTCTCAGCTGAATGTAAAGAATCTGTTACTTTAAAACAGCCCTCAGTGACACAGCAGCCGAGAAATGCAGCCTAAACTGTGAAATGCAGCTTAAATTTTATTGCATTGTGACAAATTTTATCATATTACACAATATTCTTTACTGAGCATATTATTGAAATCGTCTGTGCTTAAATAACACGTTATTATGCACAACTcattatagtgtgtgtaattagTTCTGTTAAGAATAAGTATGGCATTCTATTTTATTAGCATTCTTTAGGAATGTGCCGctactgatgcattttgtctgctCGTAAAAAAATACTgcgataaatattgtgtatagtaagaata

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007389 pattern specification process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245778 lncRNA downstream 12670 35466008 ~ 35467627 (-) True G181491
TU245767 lncRNA downstream 29905 35410419 ~ 35450392 (-) True G181480
TU245765 lncRNA downstream 77371 35399178 ~ 35402926 (-) True G181479
TU245748 lncRNA downstream 129091 35290594 ~ 35351206 (-) True G181466
TU245747 lncRNA downstream 164116 35283414 ~ 35316181 (-) True G181465
TU245799 lncRNA upstream 47231 35535736 ~ 35536768 (-) True G181510
TU245808 lncRNA upstream 85425 35573930 ~ 35574384 (-) True G181519
TU245819 lncRNA upstream 110019 35598524 ~ 35598765 (-) True G181529
TU245823 lncRNA upstream 118387 35606892 ~ 35607986 (-) True G181533
TU245831 lncRNA upstream 129377 35617882 ~ 35625755 (-) True G181540
XM_007229767.3 mRNA downstream 2525 35472086 ~ 35477772 (-) True smg8
XM_007229766.3 mRNA downstream 9508 35435128 ~ 35470789 (-) False LOC103042595
XM_022681491.1 mRNA downstream 61786 35404754 ~ 35418511 (-) True pom121c
XM_022681495.1 mRNA downstream 86073 35366285 ~ 35394224 (-) True ripk4
XM_022681505.1 mRNA upstream 53814 35542319 ~ 35552188 (-) True rhbdd2
XM_015605383.2 mRNA upstream 149500 35638005 ~ 35674164 (-) True LOC103044945
XM_007229771.3 mRNA upstream 318227 35806732 ~ 35810671 (-) True LOC103045257
XM_007229772.2 mRNA upstream 357885 35846390 ~ 35873586 (-) True smg6
XM_022680736.1 mRNA upstream 417179 35905684 ~ 35942719 (-) True ovca2
TU245774 other downstream 9866 35433232 ~ 35470431 (-) True LOC103042595
XR_002651488.1 other downstream 2302800 33176763 ~ 33177497 (-) True LOC111195091
TU244539 other downstream 3217724 32240179 ~ 32262573 (-) False tmem135
TU244401 other downstream 3545503 31922295 ~ 31934794 (-) False LOC103030555
TU244105 other downstream 4522530 30946946 ~ 30957767 (-) False G180188

Expression Profile