RNA id: XM_022681529.1


Basic Information

Item Value
RNA id XM_022681529.1
length 2340
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC111195103
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10714106 ~ 10716445 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTCGGGCCATGCTGTTTACTCTGTATTCGAGGAGGTGAGCCCAGGCACAGTAGTTGGAAATTTAGCCAAGGACTTGAGCCTTAATGTGGCCGAACTGGAGGCACGCAAGCTTCGCATCGTGCCCGGGTCGCAGAAGAAACATTTCGATGTGGATTTAAAGACCGGTGTCCTTTTTGTGTTGGATGTAATAGATAGAGAACAGCTTTGTCCGAACAGTTTGGCCTGCACAGAGACTTTGGAGGCTATTGTTAACGATCCTTTACAGATGCATCGCGTTGAAATAAAGATACTGGACACAAACGACCACTCCCCTGTTTTTCCAGGAAAATCACAACTTATTCGTGTAGCGGAGTCTGCTTTGGTAGGATCTAAATTCCCTTTGCTGGGGGCGGATGATCCAGATATTGGAATCAACTCGATAAGTTCATATAAACTGTCTCAGAATACCTTTTTCAACTTGGAGGTGCATACAGATGCCGATCAGGGGCCATCTGCTGAACTAGTGCTATTGAAGAGCCTGGACAGAGAGAGGCAGGCTACATTCCGGCTCGTGCTGACTGCTGTAGACGGGGGTAGACCACCACGATCCGGGACGACTGAAATACACGTAGTAGTTTTAGATGCTAATGATAACGCGCCTGTTTTCTCCAAATCTCTGTATAAAGTCTTGGTTTCAGAAGATGTTGCCCTTGGCACTTCAGTTTTAAAGCTGAATGCCACCGATTTGGACGAAGGAATAAACAGTGAGCTCTTATATTCATTCAAACAAGGCCAAAAAGGCATCTCTGACAAATTTACTATTGATCCGGGCACTGGAGAAATTTCAGTCATTGGTGAGCTCGATTATGAGAGCACCAGTGCATACGAAATTCGTGTTGAAGCTCGAGATGGTGGATCTACTCCACTGGCATCTCACTGTAAAGTCCTAGTAGAGGTGGTGGATGTTAACGATAATGCACCAGAAATTAAACTATCCTCCCTTTTGGACAGCGTGCGCGAGGATGCAAGGAAGGACACGGCCATTGCCTTGATCACCGTGCAAGATAAAGATGGAGGTAAAAACGGAAAAGTGCACTGTTCTATGTCCAAGAACTCCCCATTCGTGCTGGAATCCACCCAAGAAAAGTATTATTCACTTGTGTTGAGTGGTACGttggacagagaaaaaaatgagcTTTATAATGTGTCAATAACTGCCACAGACGAAGGTACACCCCCTTTATCCGGCACTACTGTCCTGACTGTCCGTGTTTCTGATGTGAATGATAACCCACCCCTCTTCCCAGAAGCGTCAgttaatgtttatataaatgaGAACAGTCCAGCAGGCGGGTTAATAGCCGTGGTCTCTGCTCATGATATTGATGATGGTGAAAATTCTCGCATAACATACTCATTATTTCACAGCTCTGGCATATCTATATCAGCATCGGTTAGCATTAACTCTGTCACTGGAGAAATGTACAGCATGCAATCTTTCAACTACGAGGAAATAAAGCATTTTCAGTTTCAAGTTCAGGCTACAGACTCTGGCACCCCTCCACTCAGCAGTAATATGACTTTGAATGTTTTTATACTGGATGAGAATGACAACAAGCCTGTTATTTTACCTCCTTATTCTGAAGCTGGGTCAGTAAACACTGAGAACATCCCGTACTCTGCTGAAGCGGGTTACTTTGTAGGTAAAGTCAAAGCTGTAGATGCTGATTCTGGTTATAACGCACTACTGTCCTATTACATCACCGAACCTAAGGGGAATAATCTGTTCCGCATCGGAAGCAGCTCTGGAGAGTTACGGACTAAAAGACGAATGAGTGACAATGACTTAAAAACTCACCCCCTTGTTATAACAGTGTGTGACCATGGAGAACCTTCCCTCTCAGCTACAGTGAGTGTGGATGTTGTAGTGGTGGAAAGTATGGATAGCATGCAGCCTACACTAAGAGAAGTACCGATGAAAGAGGAGGGTTTCTCTGATCTGAACCTATATCTGCTCATCGCTATTGTCTCAGTGTCAGTGATCTTTCTGCTGAGCCTCATCACTTTAATAGCAGCTAAATGCTACAGGTCAGATGACCCTTTCAGCACTTGCAGCCCTCCAGTGGTCACTACACACCCTGACGGGAGCTGGTCGTACTCAAAGTCAACTCAGCAGTACGACGTGTGTTTTAGCTCAGACACGCTGAAGAGTGATGTAGTGGTTTTCCCTTCGCCGTTTCCGCCTGTAGACGCAGAGCTCATCAGCATTAATGGAGGAGATACTTTCACACGGACACAAACTCTCCCTAGCAGTGAGAAGGTAAAGTCTTTTTCTGTTGACATTTGCTACTTGGGGTGA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236690 lncRNA upstream 38105 10675716 ~ 10676001 (+) True G174813
TU236689 lncRNA upstream 42935 10670898 ~ 10671171 (+) True G174812
TU236688 lncRNA upstream 46926 10666950 ~ 10667180 (+) True G174811
TU236687 lncRNA upstream 48678 10665077 ~ 10665428 (+) True G174810
TU236686 lncRNA upstream 50612 10661290 ~ 10663494 (+) True G174809
TU236795 lncRNA downstream 115723 10832168 ~ 11019418 (+) True G174874
TU236899 lncRNA downstream 371274 11087719 ~ 11088839 (+) True G174930
XR_002651422.1 lncRNA downstream 377272 11093717 ~ 11095900 (+) True LOC103022678
TU236916 lncRNA downstream 421104 11137549 ~ 11137957 (+) True G174944
TU236938 lncRNA downstream 474036 11190481 ~ 11265122 (+) True G174964
XM_022681044.1 mRNA upstream 823 10710507 ~ 10713283 (+) True LOC111195025
XM_022681047.1 mRNA upstream 4276 10707324 ~ 10709830 (+) True LOC111195028
XM_015602577.2 mRNA upstream 9208 10696559 ~ 10704898 (+) True LOC107197089
XM_015602576.2 mRNA upstream 9208 10696580 ~ 10704898 (+) False LOC107197089
XM_022681042.1 mRNA upstream 18644 10690842 ~ 10695462 (+) True LOC103034638
XM_022681530.1 mRNA downstream 549 10716994 ~ 10719326 (+) True LOC107197092
XM_022681531.1 mRNA downstream 4082 10720527 ~ 10722752 (+) True LOC111195104
XM_022681532.1 mRNA downstream 11890 10728335 ~ 10730665 (+) True LOC103030520
XM_022681533.1 mRNA downstream 16379 10732824 ~ 10735839 (+) True LOC103030205
XM_022681043.1 mRNA downstream 20301 10736746 ~ 10739405 (+) True LOC111195024
TU236173 other upstream 2161497 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 2788666 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 4172974 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 5530329 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 5810461 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 115723 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 115723 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 713426 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 1192427 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 1192427 11908872 ~ 11913456 (+) False G175108

Expression Profile