RNA id: XM_022681534.1


Basic Information

Item Value
RNA id XM_022681534.1
length 1688
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC103029876
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10756715 ~ 10758402 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATAATCTGctttgaaaaaaagtattatttacttaaataaattcAAGATtgtaaatacttatttttattcattcctTTTTGCATTTTAACTTTTGAAAATTGCCGTGATTATTGGGAAGGCCTGTCCGTGAGTGGCTAATGGCCAAGCATCTACAGGTGACGTAGAACAATGCACagtaagcattaaaaaaatgagaataatCCATGTTTTGTACGCAAATCAAACCCATAATTTCGTTTTCAAACGTTGTTTTTCTTGCTCTCAATCTGAGACTTGTTGCCTTGTGCGGAACCAATTCTAGTCACACGGTGTCGCTGTTGATTGTGAATTTAAAATTCTTAACTGATTGACATTTTGTCGTACCTTTTTCTATGAATGCTTAAGTCGGGGGAGGTGCGTAAAAAAGACTCAAATGTAAACGTAGCTGGATGGTTAATAAATGGACGAGCCTTTGGTGGAGTCTTATATTGTGTATAGTACTTAATAGTTTAAATAACCTAAACTTTAACACATGGACGTGATGCATTTCGGAGCCAGTGGAGGACGTGTCTGGATCAGGGCGTTGCTGCTTTTGTTTTGGTGGGATTTCTCTCGTTGCCAGATTTCCTACTCCATATCAGAGGAGGTAAAGAAGGGCGCTGTTGTTGGGAATTTAGCAAAGGATCTCAACATTGACGTCCAGGAGCTGCAGTCGCGCATGTTTCAGGTCGTGGCTGGATCTAATAAGCGCTATTTTGACGTGAATTTGAAAACGGGAGTATTGTTTGTGAACGACAGATTCGACAGGGAGGAGCTATGTGAGCGTAAGCAGAAATGTTCCTTAAACATCGAGGCAATGGCACAAAACCCTCTGACGCTGTACCGCATTGAAGTAAATATCTTGGACATTAATGACAACTCGCCTGTTTTTTCACTTCAGACACTTCTGCTGAACATTTCTGAAAACGTTCTACCTGGAGACAGGTTTTCCCTGCCTTTGGCCCATGATATGGATGTGGGCACGCATGCAGTAAAGAACTATAAGCTTAGTGCCAATGAGTACTTCTCAATAGATGTTCAGATTAGCGGAGAAAGTGCCTCAGCAGAGCTGGTTCTACAGAAAGCtatagatagagagaaacaAGCACTGGTTAAACTCACTTTAACTGCTACAGATGGTGGAAAGCCACCTAGATCTGGGACTTTGGAAATATTAGTCAATGTATTGGATATTAATGACAATTATCCAGTTTTTAGCCAGCCTTTGTACAAAGTCAAAGTCCAAGAGAATGCAGCAGTTGGAACTAAAATTTTGACAGTTTCTGCCACTGACCTAGATGAAGGTATAAATGGTGAAGTGGTTTATGCCATTGTAGGCCATGAAAGAAGCTCTGTAGTAAATTTGTTTTCTATAAACCCACATTCAGGAGATATCACTGTAAAAGGTAATATTGATTATGAAGAAAATGCAGCCATTGAGCTGAGAATACAAGCTCATGATAAGAGTCATTCTCCAAGACATGGCAACTGCAAAGTGTTGATTGAGGTTCTTGATGTAAATGACAATGCTCCTGAAGTTTCAGTCACTCTGCTTATGAGCTCAGTCAGTGAGGACACCAAACCTGGCACTGGTTTTGCATTGGTTACTGTTTCAGATCAAGATAGTGGCACTAGTGGCAAAGTAGACTGTAGAGTAActgcactgtaa

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236690 lncRNA upstream 80714 10675716 ~ 10676001 (+) True G174813
TU236689 lncRNA upstream 85544 10670898 ~ 10671171 (+) True G174812
TU236688 lncRNA upstream 89535 10666950 ~ 10667180 (+) True G174811
TU236687 lncRNA upstream 91287 10665077 ~ 10665428 (+) True G174810
TU236686 lncRNA upstream 93221 10661290 ~ 10663494 (+) True G174809
TU236795 lncRNA downstream 73766 10832168 ~ 11019418 (+) True G174874
TU236899 lncRNA downstream 329317 11087719 ~ 11088839 (+) True G174930
XR_002651422.1 lncRNA downstream 335315 11093717 ~ 11095900 (+) True LOC103022678
TU236916 lncRNA downstream 379147 11137549 ~ 11137957 (+) True G174944
TU236938 lncRNA downstream 432079 11190481 ~ 11265122 (+) True G174964
XM_022681046.1 mRNA upstream 8563 10745542 ~ 10748152 (+) True LOC111195027
XM_022681045.1 mRNA upstream 12433 10740427 ~ 10744282 (+) True LOC111195026
XM_022681043.1 mRNA upstream 17310 10736746 ~ 10739405 (+) True LOC111195024
XM_022681533.1 mRNA upstream 20876 10732824 ~ 10735839 (+) True LOC103030205
XM_022681532.1 mRNA upstream 26050 10728335 ~ 10730665 (+) True LOC103030520
XM_007237782.3 mRNA downstream 22394 10780796 ~ 10817393 (+) True LOC103026865
XM_022681535.1 mRNA downstream 63121 10821523 ~ 10826252 (+) True LOC103021388
XM_022681536.1 mRNA downstream 68020 10826422 ~ 10830049 (+) True LOC111195105
XM_022681050.1 mRNA downstream 72326 10830728 ~ 10838578 (+) True LOC107197471
XM_022681048.1 mRNA downstream 166672 10925074 ~ 11019432 (+) True LOC103029503
TU236173 other upstream 2204106 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 2831275 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 4215583 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 5572938 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 5853070 4836714 ~ 4903645 (+) False ptbp3
TU236775 other downstream 73766 10832168 ~ 11019418 (+) False G174874
TU236802 other downstream 73766 10832168 ~ 11019418 (+) False G174874
TU236978 other downstream 671469 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 1150470 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 1150470 11908872 ~ 11913456 (+) False G175108

Expression Profile