RNA id: XR_002651433.1


Basic Information

Item Value
RNA id XR_002651433.1
length 2135
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC103047042
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12606044 ~ 12645567 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ataaataactaaatagGAAGGCCTACAGCAGCAGGGTCTGGCTGTCCTCGTGCACGCTGTGTTGTGTAAGACTTGGCAGGCTGGACTAGAATAACacccttattctctctctcagagctctgAACTCTTTCACCCTACAGCCCTGTCCTCCCCTCACTCAGCAACAGAAAGCAACAACAACTCAGAGGAGAggtgccctctctctctctttctctctctctctctgtctattccCCCTCTATCTCTGCTTCCCTTGTGTCGCACTTTCTCTTTCACCTCTCTCCACCTACATGCACGTCTCTCGTTCACTCGCCTCGTTCTCTTACCCACAGTGAGCGAGAATGAACGCACACGGCTCTCACGCGCTGCTCTGCTCCGTGCCGCCTATATGTGCGTGTGCTGGAAGGAGAAGCGCGTGCCCGTGCTGTGCCTGTTTCCCTACAGGCTTTGCATTCTCTCGGCCGTCGGTCAGACTCGGCGCTGGAGTCTTGCATTGCTCACCTTTCTGCTGTACCTGGGTACATAAGAAGAAGCTAAAAAAGAGCTTCTTCGCTATCTCATGGTCCAAGTTCCTCGATAGGACAGGATGGACAGATGGAGACTGTGAGGAGTGTGAAGAGATTTTGGAATGGGATTGACAGGTTGTGCAGATGCCAACATTTCCTAGTGCCGTTCCGGAGCTTCTTTGGAGTCATGCTTATTGGAAAAGCAATGAAAACATGCACATCCAGAGTCTTTTTTGTGATCATTACCTTCTGCAAGTTGTGGAGTGAAGCAGATGGTGTCCCTCATAGGGTGAGTAATTTAAGCTCATGACTTAATTTAGGGGGGCTCATGAACAAATGGAAAGGAGTATTTATGCGTGCATGGTTTCTGTGTGATGGGGTGGGTGGGTAAAACACCATGATGTATAGCAGAGGAGGAAAGGGTTAAATGGAAAAGTGAAGGATGGACGAGAGTCATATGTGCCACTAAGCCCCTTTGTTCTTGTTTAGGGCCTTTACCTGGGAAAACCctttactaaacaaaaactTTCTCTCACGCGTTTAtacttgaatttttttaaatgaatctaAAAACCTCTAATAGTATCTTTTGTAGGTTGACAGTCAGTATGTTCGGATATCAGCCTAGAGTCATCTGCTTAACTCCCTAACAGTCTTATTTAAGTAACAGTCCAGTTTAATGGCAGATTATTTCTCCAACGTGGTATGCAAGTTTATTTCACATGCTTcttgattgttttatttgaaCTTTATTACGTGTGATCAGAACTGAATATTTGGCTTGATTTGGCCCTATCTCGCCCTGTTTGGCTCCTATCTAATAGGAGATTGATTTTTGGGAGAGTTTAGTAGCCTGCAGATGGTGAGAATATTAAAGGCTCTGATGTATACAGTGTGATGGCTACACATCTGACAGTGTCTCTGTCAAAGCCCTGTGGCCTGTGGGCCCTCTAATCTCAACATATCACAAACACCCAGCCTGCATGCAGTCTCATATAAAGACCCCATAATAGTTCTGTGGTCTATAGTGACTGGGTGGGATACAGTGTGTGTGCGTTGGGAGACTACAGTTactacttattttattgttttcaggGGGGTTAATTCTGCATGAATACACCTGTATGCTCTAAGATGCCTCTAAATTTGACTGTTATTGTGTACCTGTATGTCATTTATTGCAAAAAGTGATGAGAGGCCTGGCCCATGACATTGTTCCAAAATTATATCTAGCTTGTGATTATATGAAATCTTGACCTATCCTGCACATACAGTGCTGAGCAAAATCTTTGACACctatgaaaattaaaataaaatctaaaagtaATTTACATCATTGTGTTTATTAACACATTCAGGCATTCACAGAGAATGCAATATGTCAGATGTACCAGTATGGCCAAATCACAAACCAATCATCTAAACCATATTTGGGTTGTAATTTTTTAAGGTGCAGGGTTATATGTCATTTCAAGTACTTTTTCCGAGTGCGATAAAAaggcatttttgttttttattaagtgtAATTGTAGATGGTAGCTTACTGGAATGTTTTCCTCACATGGGTGTCATACAGGTTGATTTATGTgcttaaaatataatcaaacatgcaacaaattaatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237719 lncRNA downstream 611 12601206 ~ 12605433 (-) True G175553
TU237721 lncRNA downstream 5790 12597647 ~ 12600254 (-) True G175555
TU237742 lncRNA downstream 20772 12584291 ~ 12585272 (-) True G175573
XR_453678.3 lncRNA downstream 24307 12576368 ~ 12581737 (-) True LOC103046834
TU237735 lncRNA downstream 39037 12566716 ~ 12567007 (-) True G175566
TU237778 lncRNA upstream 54746 12700313 ~ 12703161 (-) True G175606
TU237794 lncRNA upstream 101221 12746788 ~ 12794710 (-) True G175611
TU237791 lncRNA upstream 146677 12792244 ~ 12794302 (-) True G175610
TU237806 lncRNA upstream 155339 12800906 ~ 12809051 (-) True G175619
TU237818 lncRNA upstream 191221 12836788 ~ 12837379 (-) True G175626
XM_022681066.1 mRNA downstream 137362 12337212 ~ 12468682 (-) False med13
XM_022681065.1 mRNA downstream 137362 12337212 ~ 12468682 (-) True med13
XM_022681068.1 mRNA downstream 299361 12256861 ~ 12306683 (-) False ints2
XM_022681539.1 mRNA upstream 47298 12692865 ~ 12753715 (-) True LOC103039067
XM_007235403.3 mRNA upstream 112659 12758226 ~ 12761626 (-) False btg3
XM_007235402.3 mRNA upstream 112659 12758226 ~ 12761468 (-) True btg3
XM_007235405.3 mRNA upstream 118621 12764188 ~ 12768958 (-) True alox5ap
XM_015601930.2 mRNA upstream 132444 12778011 ~ 12788981 (-) False uspl1
TU237170 other downstream 674290 11827807 ~ 11931754 (-) True G175119
TU237095 other downstream 962412 11643317 ~ 11643632 (-) True G175072
TU237027 other downstream 1146026 11448577 ~ 11460018 (-) False LOC103024982
TU236303 other downstream 3959740 8642965 ~ 8646304 (-) True G174497
TU236264 other downstream 4108108 8366306 ~ 8497936 (-) True LOC103039277
TU237844 other upstream 251473 12897040 ~ 12897521 (-) False G175647
TU237848 other upstream 252054 12897621 ~ 12898630 (-) True G175647
TU237951 other upstream 343370 12988937 ~ 12996934 (-) True G175707
TU237952 other upstream 343370 12988937 ~ 12996934 (-) False G175707
TU237962 other upstream 357820 13003387 ~ 13006852 (-) True LOC111195039

Expression Profile