RNA id: XR_002651435.1


Basic Information

Item Value
RNA id XR_002651435.1
length 2075
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id LOC111195042
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12853333 ~ 12859954 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAATAGGCcattcatgcaaaaaaaagggggggccaaatttaaacaactatgcaAAGAAGTGTGGGCCTCCACAGAGATGCTATTTGCCAACCACTTACTAAGTTTAgggacaaatactttttcacatagaGCAAGGTTGATTTGTATAGATTAATAAATGAGATAATTTTTTCAAATCTGCTTTtggtatttactcaggttatcacACCAGTGTAATTATATGTATTAATAGAAGGTTGACACAATTCTAATGCCTGCACATGTAAAGTTTCCCACTATGACACCTTCCTCCAACGATTCAAgacaccttgccatgagcacgctgGCAACATCGTACACACCTCAACGATAACAACAATAACACCTCATAACCTATACAGGGTCAATGCCTTCGGTGCTGATCGTGGGTGTTTGGAACTACCAAACCTTCTCTGATCCAGCGACAGCCCTTCCCAGCTCAAATGGAAAAAACCCAAGAACAACATGACATAATCAACTCTCAGAAGACTCTCACAGCCCAACAAGCTAATGCATCTGTAGGGGTTCCCTCCCAGCAGATACTGAACCCTCCCTTCaaactgaaaataaactgagctaagtacatttcacacattttttaaagtacacaatgaaagaaaatacataAGTAATGCAGTAAAACCTTTAACATCAGCAAcataatctttttattttatttttccattttgctgcttttgttaaactaaaaaaaaaaaatcaggtccaaaatgtgattaattgcTAAGCAGATTctggtagttttactgtatatgtattattaatatttattcatttttgtgtGTCTAGGCTTCTATATAGATCTGTGGCTTATTCTACAGTCAGGAGTATGCAGAATATTAAGGATATAAATTAATGCTTTGATTACTatagggtttactttgtcccacaaattGCACAGAATTGCACAATATATCAGTACGCCTTTAAAGGAAAATAGTTGTAGAATGTAAGCAATTTTTACTGTGCAATCtgcaacatatttataaaacagaacctcAAACAGAGATTTTGCTTTAACACAGCTTCCTTATCAATAGTCCTATAAACAGaccaaaaatactttaaatgttCAACAAGATATTTATCAAatgttctattgcacaagtaaaaCACTAGGTAattatcaatttacaatatgttattctTGAAGTAATGgcattttagtattaaaatggCTGTTGGTCAGTCTCCCacctttctccagttaacaaataaaaaaatcctaactTATATGTGCATTAACATTATCCTTcatgttacatttttaaattataaaaaaagggttttgctGCTTTTGGAGTGTTCTTGCCCTAGTAATTCAGCATTTTATGGCGTTTTATCCACATAAATTATTGATTGAAGgtgattgtttttgtgttttcattaggCTTGTCACATTAAAGCtttaattttgattaattaatcacagaaaatataatccatTAACAAAGTGCACACTTTCTTTAATCGCCTGACAGCACTATTGAATGAATTGGTATTTAGTATGTTATCAAAATATCTAACTGTAAAGCAAATgtctaaaagcaaagaaaatgtaaatgtaaaaggcAGAAAGCAGAATATACAACCAAATACATTTATCAATTGTCTACCTAAATACATGCAAATGATTATTTGTTATTGATGCTTTATACAAAGATTGCTGTtagcacaaaaaataaatgatctcATCAGGAAGACATTTCAATATTAAGATGTAGGTAGTGCTGATGACACAGAAGGTAAGGAATGATGCATTTGGGGCcttgtttgtgtaaaatcctgcaGGGAACACTGAGACTACAGCTAGACAATCAACAAAAGAGAACAGCGCAGTGGTTGCTCCcagcagagagagggagagagaagagagagagagagagagagagagagagagagagagagagagagagcagggtgAGCAGATAAAGAAATGCGTTGGCACTAATCAGGGAGCCAAGCGAAATGAAAAGCAGCCACAACAAATGCTGACCGAGGTGGACATGGCGGGTCGACCAGCTCTGCCCATCTCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237818 lncRNA downstream 15954 12836788 ~ 12837379 (-) True G175626
TU237806 lncRNA downstream 44282 12800906 ~ 12809051 (-) True G175619
TU237794 lncRNA downstream 58623 12746788 ~ 12794710 (-) True G175611
TU237791 lncRNA downstream 59031 12792244 ~ 12794302 (-) True G175610
TU237778 lncRNA downstream 150172 12700313 ~ 12703161 (-) True G175606
TU237826 lncRNA upstream 10118 12870072 ~ 12871807 (-) False G175632
TU237827 lncRNA upstream 10118 12870072 ~ 12871807 (-) True G175632
TU237842 lncRNA upstream 36171 12896125 ~ 12896419 (-) True G175646
TU237843 lncRNA upstream 38128 12898082 ~ 12898594 (-) False G175647
TU237849 lncRNA upstream 38801 12898755 ~ 12899269 (-) True G175648
XM_015601930.2 mRNA downstream 64352 12778011 ~ 12788981 (-) False uspl1
XM_007235404.3 mRNA downstream 64352 12778011 ~ 12788981 (-) True uspl1
XM_007235405.3 mRNA downstream 84375 12764188 ~ 12768958 (-) True alox5ap
XM_007235403.3 mRNA downstream 91707 12758226 ~ 12761626 (-) False btg3
XM_022681071.1 mRNA upstream 147863 13007817 ~ 13011654 (-) False LOC103040161
XM_015601940.2 mRNA upstream 147863 13007817 ~ 13009931 (-) False LOC103040161
XM_007235410.3 mRNA upstream 147863 13007817 ~ 13009884 (-) True LOC103040161
XM_007235412.2 mRNA upstream 157572 13017526 ~ 13019489 (-) True LOC103041391
XM_022681078.1 mRNA upstream 392203 13252157 ~ 13254539 (-) False LOC103044870
TU237752 other downstream 229778 12623211 ~ 12623555 (-) True G175583
TU237170 other downstream 921579 11827807 ~ 11931754 (-) True G175119
TU237095 other downstream 1209701 11643317 ~ 11643632 (-) True G175072
TU237027 other downstream 1393315 11448577 ~ 11460018 (-) False LOC103024982
TU236303 other downstream 4207029 8642965 ~ 8646304 (-) True G174497
TU237844 other upstream 37086 12897040 ~ 12897521 (-) False G175647
TU237848 other upstream 37667 12897621 ~ 12898630 (-) True G175647
TU237951 other upstream 128983 12988937 ~ 12996934 (-) True G175707
TU237952 other upstream 128983 12988937 ~ 12996934 (-) False G175707
TU237962 other upstream 143433 13003387 ~ 13006852 (-) True LOC111195039

Expression Profile