RNA id: XR_002651456.1


Basic Information

Item Value
RNA id XR_002651456.1
length 1105
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC111195063
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19949596 ~ 19955474 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgattatattccaaaggttttcaatttggtgaaatcaaggAAACTAAtactttttaagtgatctctttttgtTCCAAAGCTGTTTTTCCTTCCtccttttatttcttatttgtaAGTAAGTTATATTTTGGTATAGTACCACCCTGTTAATGATTATACTATTATTTAATCTCTAGCAGTCTTGTCTGTAAGTTCTCTGAAACAATACGCTTTcataatcaataaaataggagtcacaaaaaaacaaaataaaatgaacatgcaTATTATTGTTTTCCGTTTTATTTCAACAGTTTACTTTTACCAATAACAGTTTGCTCTAACaatatttgtgaaaaaaaaaacaacaattgaTTTTCCTTAATCCTTCTCTGCTGATTGCCTCTGGTGATCACTGGAGGCACTGTGGGAAAACAGCTCACTCGTGCGGTCATGTGATCTTATCTCCTATGGGACGAGTCACTGACCAAGTCAGCTTGTTGTGCACCAAGGAGGAGATAAGAGAAAACTGCACAGCTTTTCACCTCGAGCAAACAGTGCAGCAAGACGGTTCAATATTTTCATCATGTGAAGCAGTAGAGGCACCAGAACCAATCAGGTTCAGCTCCAAGATGCACAGTTTTTCCAGGTTCCTGCAAGCTCCTATAGTGTGGCGCTCACTCTCCGGCGTTTCAATGCAGTACCATCTGTATATTACTCAACATGGCATGCTCGCTCTGTGAATAGACGCGGTATTGAGCGTGGCCTCCACATCGCTGTCTCCATAAAAACAAGCCGAGGGGTCACGCGGAGAATGAGACAACGGCGGCAGTCAGAGCCAGAGCGGAACTGTCAGGCAGCACAAGCGCGACATTTCAAACTGCCCCACACAAAGAGGTGCGGAGAAAGAGGAAAATGCTAGAACTGCTGAAGAACACTGCTGGAAATTAACCCTTAAACGTCTGTCGCTGCCAGCAGTAACAATGGCTTGTTGTGACTGTAATTACTGCCTAGTTGTGACTTGCTCAGAAAAGCAGAAgctttgtttaaaatgaaaactgCTACTGTAAAATCCTACACTTGCGTCTGTAAGcaataaatgttgttttattttttaaatactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240961 lncRNA upstream 58883 19890267 ~ 19890713 (+) True G177861
XR_001518763.2 lncRNA upstream 73206 19875366 ~ 19876390 (+) True LOC107197765
TU240916 lncRNA upstream 116486 19795144 ~ 19833110 (+) True G177830
TU240919 lncRNA upstream 130886 19818233 ~ 19818710 (+) True G177833
TU240894 lncRNA upstream 170060 19775840 ~ 19779536 (+) True G177826
TU240988 lncRNA downstream 35170 19990644 ~ 19995167 (+) True G177885
TU241057 lncRNA downstream 145102 20100576 ~ 20100802 (+) True G177940
XR_002651458.1 lncRNA downstream 149860 20105334 ~ 20123848 (+) False LOC111195064
XR_002651457.1 lncRNA downstream 165772 20121246 ~ 20123848 (+) True LOC111195064
TU241076 lncRNA downstream 202373 20157847 ~ 20163869 (+) True G177955
XM_007255020.3 mRNA upstream 16776 19919877 ~ 19932820 (+) True pum3
XM_022681215.1 mRNA upstream 30619 19896739 ~ 19918977 (+) False LOC103023409
XM_022681214.1 mRNA upstream 30619 19896740 ~ 19918977 (+) True LOC103023409
XM_022681216.1 mRNA upstream 30619 19896740 ~ 19918977 (+) False LOC103023409
XM_022681217.1 mRNA upstream 32543 19896737 ~ 19917053 (+) False LOC103023409
XM_007255022.3 mRNA downstream 133764 20089238 ~ 20096711 (+) True LOC103043854
XM_007260831.3 mRNA downstream 193784 20149258 ~ 20150118 (+) True LOC103030097
XM_007260825.3 mRNA downstream 196987 20152461 ~ 20155315 (+) True LOC103027562
XM_015608721.2 mRNA downstream 274053 20229527 ~ 20257745 (+) True smad2
XM_007260822.3 mRNA downstream 274053 20229527 ~ 20257745 (+) False smad2
XR_002651455.1 other upstream 173805 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 227207 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 1405599 18539898 ~ 18543997 (+) False LOC103024155
XR_002651448.1 other upstream 1619107 18324873 ~ 18330489 (+) False LOC103047412
TU240030 other upstream 1723463 18224273 ~ 18226133 (+) True G177219
TU241050 other downstream 133787 20089261 ~ 20093862 (+) False LOC103043854
TU241070 other downstream 183348 20138822 ~ 20139564 (+) True G177950
TU241506 other downstream 2293670 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 2504918 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 2504918 22460392 ~ 22465702 (+) False LOC103025565

Expression Profile