RNA id: XR_002651458.1


Basic Information

Item Value
RNA id XR_002651458.1
length 1011
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id LOC111195064
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20105334 ~ 20123848 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAACGCTGAAATCTGAGATCACCTGCAGATCATGGACTGACAAAGCTGAAGAATGAAGAGGTTTATTGTTGCATTGGTGTTTCTGGCTGTGGGTTCCTCTGCACCTGTGGAGCAAGTCAGTGAGAGAGATAATGTGCCAACTTTTGAAGCGGAGCAGAGGCCCTTGGGTCCACCATTGGCTCAAATAGTACCAGGAACTCGGACCATCTACTACCCCATTCAGTCTGACTATCTATTATCTGGATTAGGTGGATTGGGTGGATTGGGTGGATTAGGAGGATTAGGTGGAATAGGTGGATTCCCGATTACCAATTCACTGTATCCTAATTACCAATGCTACCCATTCTACCCATACTGTGGTGTATACACCGTGCCACCTATCATCATCTCCGTGCCACAAGCAGCTGTCTGACCCAGCAGGTCCTTCCATCATTCTATATGAACTAGGGGAGGGCGGATCGATTTAATATATCGATAGTATCAATGCTAACATAGGTATTGGGTATTGATTGATACTTGTGTGATGAAATCAATGCTTACGTTTCAGTTTCTCTTTTGTACAACTAATTTACAGGCATTTACAGAGTGACCGACTGTCCATACAACACTATATTCTCACTTCACTCATGCTCAATTAGCCCCTCCCCTTTCCGCCCCGCCCCCATAGCATTAGAAAGGTGTGTAATGTCATTTTTCAGTGTAATTGATCATCCCAGTAATTTAGCAGACTGATTAATAGACTATTCAGACAGTCACATAGGGAATATATTCAGCCAGTTCAAATAGAACTAAATGAATTATTtcactgaaactgaaaaataGATATGCTACAAAAAGATATAGCTATGCCTCAAACCTGAACTATGAATATggctgaataaatattttatgttaactGTCAAAGgaatattaatgaaaaaagtttaattgCAAGTGCAGATGACCACCCCAAAAGTTTTCTATACACATTTCTGAgtaacttaataaaaatatttttatttgcctgAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241057 lncRNA upstream 4532 20100576 ~ 20100802 (+) True G177940
TU240988 lncRNA upstream 110167 19990644 ~ 19995167 (+) True G177885
XR_002651456.1 lncRNA upstream 149860 19949596 ~ 19955474 (+) True LOC111195063
TU240961 lncRNA upstream 214621 19890267 ~ 19890713 (+) True G177861
XR_001518763.2 lncRNA upstream 228944 19875366 ~ 19876390 (+) True LOC107197765
TU241076 lncRNA downstream 33999 20157847 ~ 20163869 (+) True G177955
TU241106 lncRNA downstream 47437 20171285 ~ 20173721 (+) True G177976
TU241129 lncRNA downstream 75916 20199764 ~ 20203551 (+) True G177995
TU241117 lncRNA downstream 112369 20236217 ~ 20240919 (+) True G177984
TU241183 lncRNA downstream 138038 20261886 ~ 20262774 (+) True G178026
XM_007255022.3 mRNA upstream 8623 20089238 ~ 20096711 (+) True LOC103043854
XM_007255020.3 mRNA upstream 172514 19919877 ~ 19932820 (+) True pum3
XM_022681215.1 mRNA upstream 186357 19896739 ~ 19918977 (+) False LOC103023409
XM_007260831.3 mRNA downstream 25410 20149258 ~ 20150118 (+) True LOC103030097
XM_007260825.3 mRNA downstream 28613 20152461 ~ 20155315 (+) True LOC103027562
XM_015608721.2 mRNA downstream 105679 20229527 ~ 20257745 (+) True smad2
XM_007260822.3 mRNA downstream 105679 20229527 ~ 20257745 (+) False smad2
XM_015608718.2 mRNA downstream 257841 20381689 ~ 20395156 (+) False skor2
TU241050 other upstream 11472 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 329543 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 382945 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 1561337 18539898 ~ 18543997 (+) False LOC103024155
XR_002651448.1 other upstream 1774845 18324873 ~ 18330489 (+) False LOC103047412
TU241070 other downstream 14974 20138822 ~ 20139564 (+) True G177950
TU241506 other downstream 2125296 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 2336544 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 2336544 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 2338143 22461991 ~ 22465702 (+) False LOC103025565

Expression Profile