RNA id: XR_002651470.1


Basic Information

Item Value
RNA id XR_002651470.1
length 196
RNA type ncRNA
GC content 0.51
exon number 3
gene id LOC111195073
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23703987 ~ 23707849 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaatctacacagatttctctcctgaaaacaatttatttggGAGGCAGAGTGATGTTCCGGCCGCACGGCTCTCTCGCGGGGGACTGAGGTCAGACGGGGAACAGAGTGGAGGAAAGAGTCTAGAGAGTGTGGAGAGACGAGAAGTGCGGAGAAGACCACACTGACCATCTGTAGAAGAGTGAAGGAAACTTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242010 lncRNA upstream 184773 23516311 ~ 23519214 (+) True G178634
TU242013 lncRNA upstream 188086 23515575 ~ 23515901 (+) True G178635
TU242008 lncRNA upstream 203646 23499843 ~ 23500341 (+) True G178632
TU241985 lncRNA upstream 228782 23447089 ~ 23475205 (+) True G178611
TU242000 lncRNA upstream 271276 23427385 ~ 23432711 (+) True G178624
TU242192 lncRNA downstream 480137 24187986 ~ 24191257 (+) True G178781
TU242218 lncRNA downstream 584126 24291975 ~ 24293344 (+) False G178805
TU242219 lncRNA downstream 584126 24291975 ~ 24293344 (+) True G178805
TU242222 lncRNA downstream 584126 24291975 ~ 24293344 (+) False G178805
TU242225 lncRNA downstream 590263 24298112 ~ 24301847 (+) True LOC111195075
XM_022681286.1 mRNA upstream 13632 23541850 ~ 23690355 (+) True LOC103037096
XM_022681285.1 mRNA upstream 189276 23503307 ~ 23514711 (+) True ppp2cb
XM_007255251.3 mRNA upstream 189276 23503307 ~ 23514711 (+) False ppp2cb
XM_022681284.1 mRNA upstream 206369 23494154 ~ 23497618 (+) True LOC103034079
XM_022680722.1 mRNA upstream 209687 23479537 ~ 23494300 (+) True LOC111188215
XM_007252428.3 mRNA downstream 739943 24447792 ~ 24451993 (+) True LOC103032894
XM_007252430.3 mRNA downstream 764357 24472206 ~ 24482883 (+) True gramd2b
XM_007252431.3 mRNA downstream 797788 24505637 ~ 24509580 (+) True phax
XM_022681293.1 mRNA downstream 816964 24524813 ~ 24542250 (+) True lmnb1
XM_007252433.3 mRNA downstream 816966 24524815 ~ 24542250 (+) False lmnb1
TU241823 other upstream 738998 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 994430 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 1157857 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 1201828 22493440 ~ 22502159 (+) False LOC103022948
XR_002651460.1 other upstream 1201828 22493440 ~ 22502159 (+) False LOC103022948
TU242273 other downstream 740031 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 794025 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 3206037 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 3816469 27524318 ~ 27525389 (+) False LOC103038954
TU243091 other downstream 3816469 27524318 ~ 27525441 (+) True LOC103038954

Expression Profile