RNA id: TU246143


Basic Information

Item Value
RNA id TU246143
length 1503
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G181750
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 27415 ~ 28989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGCTGAAATcatatatagttatatgttatatatttatatgtgtatattttagGAGCTCAGGTTGACGATAACGTTCCCCGGCGCTCTGGACATCGCATTGTAGCGCCCCCTGGAGGCCGATCCAACATCACCAGCCTTGGCTGAGACCCTATCgaacacctgtgtgtgtgtgtgtgtgtgtgtgtgtggattccTTTACTCCTATGATAACACATTCTGTCCACTGCTGCACATTGTGTGTCATTGTGTaggtcatcatcatcatcatcactgtgGAAACTAGGAAcactgtgtgtttgggtgtagaAAGTGTTATAAAGTGTGTATAAATGATCTTTAAAGCCTTGGTGAACCCCACCGGCCTGCTGTTTCTGATGTTCCTGCAAACTGGTGCTGCCTCTAGTGGACAACTGCACATGTAGCAGTCTCACTTCAGGATATTgtcttttgtctgtgtttttttttttttactttggatTGAAGACAGACCCCGACCATAATTCTCTGTGCACTGAATAACTTTGCAATATTAGCATAATTAAGGTCCACTTGATTGTTTCTGTGGCCAAAGCTGGAGACGCACTGCATGAGTTTTACAGATATGTGGcgatgtttattattattattattatttatttgtttatttattttattttctaatattaTTACACTGCTAGACTGTTGGTATTTTTCTTTGATCATGGTCGTGTGGTGAGTCCAGTGTTGTTACAGTGTTGTACAGTAAAGCCCGgcagtgtgtgtgactgtggaTGTGTATAACAATAAGTTATAATGGAAACACTGACCCCTGCTGTTTAAACACGTGGCACTTCCTGTTAAACACTCAGTACTTCCTGTTAACCTGTACCACAATCCTTGAAAGCCGAAGTGTTCCTCGACTGTGACTTTGAAATTTgtaatttgttaatttgttgCAACTGCATTACAGCAGCTAAGTATACAaactaatgctaacgctaacattagctttaacatttttacagtaaactgaATAATCACCTACTACAGTTATGACTGAATCACCTTCTACAGTTCTGACTGAATCACCTTCTACagttatgctaatgctaatgctactgatACTGACACACACTGATACTTTTAAATCATTGCTGTGAAATAAAACACTGGAAGATTTTGATTATCAATATGTTactgatttctctttatttacaaAAGCTTTATTCACCATATTACCAgtgtcaatataaaaaaaagacttaaaatcTTAATGCTAGCTGGCTAAGCTAGCTGTCTGTCTATATTACATGTTATGTGGGCAAAACCAGAAAGTCTGTAGAGTGAATACCCACTGAAGAATCTATTCTGGGTTTGTTAGATTATtaagtgagtccaaaatgaatgggacTATATGGAGcaactgttataaaataaaagtttataaaagtttaatagttttttatattgaacaatatcctttttcttttcaacacagaacaatatcaaATGTTTGGGGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651501.1 lncRNA downstream 64176 93165 ~ 93769 (+) True LOC111195166
TU246176 lncRNA downstream 134640 163629 ~ 166044 (+) True G181777
TU246179 lncRNA downstream 162968 191957 ~ 194937 (+) False G181779
TU246174 lncRNA downstream 178757 207746 ~ 208523 (+) True G181775
TU246186 lncRNA downstream 182846 211835 ~ 231061 (+) True G181782
XM_022681588.1 mRNA upstream 3449 12979 ~ 23966 (+) False LOC103026105
XM_022681591.1 mRNA downstream 11077 40066 ~ 45653 (+) True LOC111195165
XM_022681614.1 mRNA downstream 36892 65881 ~ 107890 (+) False LOC103030568
XM_022681612.1 mRNA downstream 36892 65881 ~ 103458 (+) False LOC103030568
XM_022681611.1 mRNA downstream 36893 65882 ~ 107890 (+) True LOC103030568
XM_022681613.1 mRNA downstream 36893 65882 ~ 107890 (+) False LOC103030568
TU246178 other downstream 162968 191957 ~ 199996 (+) True G181779
TU246212 other downstream 247682 276671 ~ 278173 (+) True G181799
TU246214 other downstream 253087 282076 ~ 286281 (+) True G181801
TU246236 other downstream 362625 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2429305 2458294 ~ 2460322 (+) False LOC103029952

Expression Profile