RNA id: TU246176


Basic Information

Item Value
RNA id TU246176
length 2196
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G181777
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 163629 ~ 166044 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGGGCAGTAAAGTCCACGGCAGCGCCACGGTTCAGCAGCAGTGTGGAAACGTTGACGTTCCCGTAGTGAGCAGCAATGTGAAGaggagtaaagccactctgatagaggaaaacaaaggaaagaaaggggaaaaaaagaagggacagtgaagaagaaaagaaagagagatttaGTTCCTGCGTATAGTCGGCAGGGGAAGCCATGCAGCATGCTAGTGAAGCATCGCAGCtgagaagaaattaaataattaaatgaaagagagagagagagagaaagaaagagagagagaactgacccaatacaaactgttaaaattagtGAAGCATGCAAAGACATGCTAATACtgataaataaactctttttccaTTATATGAGctcagatcacacacacacacacacacacacactcatatcagCAAAACCACGGAAAAAGgtaaagaaatagagaaaaagcaCTAAAGAACGAAacaacattagaaaaaaaaacagaacatgaaGATAAAGCAACTAATTAGTGCATCTAATAGCTAATCGCTAATCAGAGATGAGTGTTAATGTggatgtagtgtgtgtgtgtgtgtgagaaatggGGCCGTGCCTTACCTTCCCGCTCTGACAGACATGGTGCAATTCGAGAGACAAAATTAACAAAAGGGTGCAGCGGAAAAACTTAACTCAAAACTTCTACAAACACcgaccaatcagagagcagcgAGCAGACGGCATGCTATatccacacactcactgacttgtaacacagatatacacacattcATCAAGTATATAACACCAGTCTATAGCCATAGTATATGAATCCTGCACATATCCAAGAATAGAACCCCAGAACATAATTCTAGTATATAACCATAGTTTATAATCTCAGTATATAAACCTAATACatttacagctttggaaaaaattgagAGCGCACTTGAGTttctttatattcataaagagttcagaaatcaatatttggtggaataaccctgatggtttttaatcagagtttttttcatgcatcatggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctactttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagcgtttttttagtttggtaaaatcaaagaaactcatcatttttaagtgctctcttattttttccccaaagctgtatatttacacataaaacataaaatctcGGTATATAAACCAAGTATAATTAAACTCAATATATAACACCAGCTTATAGCCCAGCACATAAATCCCATACATGACCCAAGTATAGAACCCCAATACATATACCTAGTACATAACCGTTGTTTATAATCTTAGTATATAACCACAGTATACTGCATAACTATGCTATATAATCCCAGTGTATAAACCCATCATATAATCCATAACATAAATCTAGTGTATAccctaatatatacatatattcacacataacataaaatataagcCTAGTATATAAACCCAGTATTTAAATCCAGTATAATgtccagtttaaaaaaaaaaaacaccagaattTAACTTCAGTATATGACCCCATTATATAACATCAGTGTATAAGCCCAGTATATAAATCATACCATCCCATTAAATAAACCCAGCATAGAACACAGGAATATAACTCCACTATATAACCCAACTATATAAACCTCATGATAAATACCCAGTACATAAACCCAGTGTATAATCCCGGTGTATGACCCAGGTATATAAACCCAGCATAAAACCTCAGTCTATAGCCTCAGAATATAAACCCAGCATATATAAATTCACTGTATAAATCCTGTATATAACACTGGTATATAACCCCACTTTACAATCccaatatttactgtatactgtatagaGTCATTAACAAACAAAGCTGTATCTAAAGTCTatcaaatgaaaaaacaatattatcagTAATAAAAACCATAACCCAGACAAAACCAGaagttttaccatttttagtGGCATGCAAGAGACTAATACATGCAGTgtttgctctgtgtgtgtgtgtgtgtgtgtgtgtttgctgtgtgtgtgtgtgtgttgtagagaAGACAGACAGAAGCATAAAGAAGACTGGCGGTCAGCTGAGAGAGTTTCAGTACCTCAGTGGTTCTGTTCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651501.1 lncRNA upstream 69860 93165 ~ 93769 (+) True LOC111195166
TU246136 lncRNA upstream 134640 27415 ~ 28989 (+) True G181750
TU246179 lncRNA downstream 25913 191957 ~ 194937 (+) False G181779
TU246174 lncRNA downstream 41702 207746 ~ 208523 (+) True G181775
TU246186 lncRNA downstream 45791 211835 ~ 231061 (+) True G181782
TU246184 lncRNA downstream 54032 220076 ~ 231061 (+) False G181782
TU246208 lncRNA downstream 102658 268702 ~ 269257 (+) True G181797
XM_022681614.1 mRNA upstream 55739 65881 ~ 107890 (+) False LOC103030568
XM_022681611.1 mRNA upstream 55739 65882 ~ 107890 (+) True LOC103030568
XM_022681613.1 mRNA upstream 55739 65882 ~ 107890 (+) False LOC103030568
XM_022681615.1 mRNA upstream 55739 65882 ~ 107890 (+) False LOC103030568
XM_022681612.1 mRNA upstream 60171 65881 ~ 103458 (+) False LOC103030568
XM_007229284.2 mRNA downstream 36264 202308 ~ 207014 (+) True LOC103027206
XM_022681619.1 mRNA downstream 79422 245466 ~ 247320 (+) True LOC111195167
XM_022681620.1 mRNA downstream 84432 250476 ~ 256183 (+) True LOC103031511
XM_022681623.1 mRNA downstream 92847 258891 ~ 264780 (+) False LOC111195169
XM_022681622.1 mRNA downstream 92849 258893 ~ 264780 (+) True LOC111195169
TU246178 other downstream 25913 191957 ~ 199996 (+) True G181779
TU246212 other downstream 110627 276671 ~ 278173 (+) True G181799
TU246214 other downstream 116032 282076 ~ 286281 (+) True G181801
TU246236 other downstream 225570 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2292250 2458294 ~ 2460322 (+) False LOC103029952

Expression Profile