RNA id: TU246179


Basic Information

Item Value
RNA id TU246179
length 1305
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G181779
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 191957 ~ 199996 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtcaaataaaaatatacactttattaaTTCTCTACTTCTGAACAACCTTATGAACACGTACCACAGAGTCGATAACATAACAGAACCACCTTAAACCATTAAGTCCAGTTCTCCATGAACAAAAACATCCTTGGTGGAGGAGGACTGAACTGGTCCAGAGTTTAGAACCGATCTACAGCAGCACACAGAGCTTCAGACGGAAGGAGACAGACCCAAATGAGGTTCTAGATCAAGCTGATGAATACGGGTCCAGATAACCGCAGCTTTGCACCATAGTATAAATCAGGATTAGAATAGAATTAGATGAGCAGGCATCAAATCTAGAAGAGTACCTGGATGGAGTGTGGACTGGAATTACTATTCTGATCTAGTTAAACAGGTTTGAGAAAAACAGTCTGGATTTGGATTCATACCATATACcagaactaaataaataaataaacacagagacaaaaTCTGGATTAATATTTGAAGTGACAAATCAGGATTAATATGTCCAATTATTTACTTGGATTATGTCCAAatatcactctctttttctgatCTGGATCACGTTAAGAAGCCAACACGTCCAGTCTGCTGTGAGCTCTGCGGAACTCTAAAGACCATTATGGTTCTAGACTCTGCTGAGTCAGCACGAGGAGGTTCTTTGGCtgctttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatactctgCATGCGCGTGAGTGTTTGTCGGTATCCACAGTAATGTCCATTAAAGCCCCTCTGATCTGCATTAGCTTCTTCGACTGTAATCTGAGCTCAGCACACACTTCCCCCGGCAACGTCCATCACATGAAGCTCCGCCCACGACCAGGAAGTCGCCGTGAGGCACAGCCTCTTAGGAGCCGGTCAGCTGATCCAGGTTGCCATGGGAACGGTTGGCGAGGTGAGCTTTAATTATTTCTCCGAACACACTCCGCTTTAGCAGGTCGTAGGCCATCGGCAGCAACTGACCAATGATCTTATGGAAGTaATGTGATCCGAAGCAGAAGAGGTCGATGCCGGCTTCGTAGCCCATTCCGTAATCGCACTCATCGTTAGCGAACTGCACAAACGTCATCATCTCCTGAATAGGAGCAAAGGCCGTCATCCTGGCTTTATCATCCACAGCTTCTGCGATATCCCTGCAGATCTTCTTCAGATCAgctacaaacacacagacacacacttctTTAGAAACATAGGAAACAAGAAGTTAAAGCAGAGATTCAAGTTGTCCACCAGAATGTAAcctctttttctgtttaaaaaaaaaaaaaaacacttatataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246176 lncRNA upstream 25913 163629 ~ 166044 (+) True G181777
XR_002651501.1 lncRNA upstream 98188 93165 ~ 93769 (+) True LOC111195166
TU246136 lncRNA upstream 162968 27415 ~ 28989 (+) True G181750
TU246174 lncRNA downstream 12809 207746 ~ 208523 (+) True G181775
TU246186 lncRNA downstream 16898 211835 ~ 231061 (+) True G181782
TU246184 lncRNA downstream 25139 220076 ~ 231061 (+) False G181782
TU246208 lncRNA downstream 73765 268702 ~ 269257 (+) True G181797
TU246210 lncRNA downstream 76617 271554 ~ 273833 (+) True G181798
XM_022681614.1 mRNA upstream 84067 65881 ~ 107890 (+) False LOC103030568
XM_007229284.2 mRNA downstream 7371 202308 ~ 207014 (+) True LOC103027206
XM_022681619.1 mRNA downstream 50529 245466 ~ 247320 (+) True LOC111195167
XM_022681620.1 mRNA downstream 55539 250476 ~ 256183 (+) True LOC103031511
XM_022681623.1 mRNA downstream 63954 258891 ~ 264780 (+) False LOC111195169
XM_022681622.1 mRNA downstream 63956 258893 ~ 264780 (+) True LOC111195169
TU246212 other downstream 81734 276671 ~ 278173 (+) True G181799
TU246214 other downstream 87139 282076 ~ 286281 (+) True G181801
TU246236 other downstream 196677 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2263357 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2330832 2525769 ~ 2569294 (+) True LOC111195173

Expression Profile