RNA id: TU246212


Basic Information

Item Value
RNA id TU246212
length 583
RNA type TUCP
GC content 0.45
exon number 4
gene id G181799
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 276671 ~ 278173 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacaaacacactgcaatGGTTGCATTGCATGGTTTACTACACCTATTAGTACACAACTAAAGTTTAATATCCAGCCAGTCTCAGGTCTCTGATTGGACGGTTGTGGCCAGAAAGGGTCTTTAAAAGCATCCTCCAGACATCACTGATGTACCTAAAGCTTGTGAAGAATCCTCCGTCTGACTCTATCTGACTCTACAGAGTTTACAAGAAAACATGAAGGTGGCTATCATTGCACTGTGTCTCATTGGACTGTGCTGTGCTCTTCCAgttgaTGATGAGCATGAACGAGACAAGCGATCATCGAGCGGAGAGCGCTACCGAGGAGGATCGTATTATCCTATGTACTACCCCAACAACGGTTTCAACAACGACAACAACAACCTTCTGAACCTGCTGCTGCCCCTGCTACTGGCTCAACTCCCCGCTGCTGCTGCCCCGGCTCCGGCTCCGGCCCCGGCTGGAAAATAATTCACTCAGTGCAATACAATTACATTAAAACAGAGCATGCATGCAATTCATATGTTTTAAGCTATTTCTATTTCTGTGCATTCTTTAAATAAACCTatggatctgaaaaaaaaag

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246210 lncRNA upstream 2838 271554 ~ 273833 (+) True G181798
TU246208 lncRNA upstream 7414 268702 ~ 269257 (+) True G181797
TU246186 lncRNA upstream 45610 211835 ~ 231061 (+) True G181782
TU246184 lncRNA upstream 45610 220076 ~ 231061 (+) False G181782
TU246174 lncRNA upstream 68148 207746 ~ 208523 (+) True G181775
TU246213 lncRNA downstream 1392 279565 ~ 279790 (+) True G181800
TU246215 lncRNA downstream 4196 282369 ~ 282804 (+) True G181802
TU246216 lncRNA downstream 10837 289010 ~ 292251 (+) True LOC111195149
TU246219 lncRNA downstream 10837 289010 ~ 390166 (+) False LOC111195149
TU246223 lncRNA downstream 21945 300118 ~ 306312 (+) True LOC111195150
XM_022681623.1 mRNA upstream 11891 258891 ~ 264780 (+) False LOC111195169
XM_022681622.1 mRNA upstream 11891 258893 ~ 264780 (+) True LOC111195169
XM_022681620.1 mRNA upstream 20488 250476 ~ 256183 (+) True LOC103031511
XM_022681619.1 mRNA upstream 29351 245466 ~ 247320 (+) True LOC111195167
XM_007229284.2 mRNA upstream 69657 202308 ~ 207014 (+) True LOC103027206
XM_022681573.1 mRNA downstream 11163 289336 ~ 291542 (+) False LOC111195149
XM_022681574.1 mRNA downstream 21922 300095 ~ 306096 (+) False LOC111195150
XM_022681624.1 mRNA downstream 29504 307677 ~ 315123 (+) True LOC103032143
XM_015604221.2 mRNA downstream 47463 325636 ~ 329837 (+) False LOC103032759
XM_022681627.1 mRNA downstream 47463 325636 ~ 329585 (+) False LOC103032759
TU246178 other upstream 76675 191957 ~ 199996 (+) True G181779
TU246214 other downstream 3903 282076 ~ 286281 (+) True G181801
TU246236 other downstream 113441 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2180121 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2247596 2525769 ~ 2569294 (+) True LOC111195173
TU246909 other downstream 2978194 3256367 ~ 3258850 (+) True G182356

Expression Profile