RNA id: TU246216


Basic Information

Item Value
RNA id TU246216
length 1834
lncRNA type sense_over
GC content 0.37
exon number 4
gene id LOC111195149
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 289010 ~ 390166 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatatataaatatatgactaaaaatgatcatatTGTCCTATACACTCAGTAGAGCTGAAGAACTGGATACCGGGTGTAGAAAGCAGGATGTTTGTTGGTGATTGGTGTGTATCCAGTGTCTTTAGTTGTGAGGTGGGGTGAGAATTGCAGCAGCGACAACTAATCCCCTCACATCTAATCcctctccagctccagctcagcttgTGAAATGACCattaatgacaaaaacacattaagcAATTCCCTCAAGGCTCATTAAGATTCGAGCTAAACCCACTGTTATTACCCTTATTACTCAGAATAATGCAATATCCTGCGGGTGAAGCCTTGTGAGGGTGgtgcacatgcaaaacagagaggaaagaaatgtattttcatttcattctcCTACAGAGATACAGAGCTTCTCTTACAACAGCTGAACAGGAGGTTCACGAGAGAAATGCATTATCCCAGAATGGCCAGTTCATTACTGCTGTCTGTCCTGTGTCTGACACTGCCTGCCACTGTTTCTCCTCATCATGGATATAAATTCTCTGCAAGCGACGAGaGGTTCTACTGGCCTCCGTATCCTGGGTTCCATCATTATCCAAGTGTCCCACCATCTTGGATTCCTTGGTTTACTGTGCTTTATCCTTTTAATCCTGCCCCCGCCCCGGCTCCTGCCCCGGCTCCTGCCCCGGCTCCTGCCACTACACCTGGTCCAGTGGTCACTCGTGGAGACGGCTAGAAGATACCATACAGTAGATCTGGATTTCacttataaaaacaattaatttaatagtttttacaGAAAAAGGAGCAGAAGTAATGGGATAGGATGATTTCTAATTATGAAAATCATGCTGTTTTGAAGCATCATGATTATCAGTATTGTAAAATTACATACACTAATGGTCAGATGTTTTACAACGCCCCAGACTACCAgtgctttaatatatatatagtgcccTGTATAGGCATGTCTAACAGTCAACCATCTCTCactaagaggtacactacccaaaaaagTCCTCTCTTAATCCAGACATTAGACACCATGAAGTTTATGctctttttgttttacaataccaaaatatttttctaattttattccaAATCATGTTAACATagtgttaaaaaatgtaattacacaaatatgcagtatatataagcaccaaaattaacattttggcCCAAATACAgaacctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcttctatctatctatctatctaatctatctatctatctatctatctatctatctatctatctatctatctatctacctacctacctacctacctacctacctacctacctacctacctacctacctacccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccgttttTAGGAAGCAAGTCATTTGTTAACAACTTACAGCTGGTCAAACAGAGCTCTGgaaatggatttttttaaatgaaaatgaaaatatatatatatatatttttttttatatatatttacaaatcaTCCCATCCTGTTACGCAGttacacactttttatttttgtatttaaatgccCCTGAACTGCactaaatgtatattttgatGAACACTATTACACAATTAcaattagtaataataaaataaaatattttttaaacacacacttacactcaagTCACTGTAAAATGACAATACTGTATGGTGGTACGtgccaaaacaaataaactttattttataagcAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246215 lncRNA upstream 6206 282369 ~ 282804 (+) True G181802
TU246213 lncRNA upstream 9220 279565 ~ 279790 (+) True G181800
TU246210 lncRNA upstream 15177 271554 ~ 273833 (+) True G181798
TU246208 lncRNA upstream 19753 268702 ~ 269257 (+) True G181797
TU246186 lncRNA upstream 57949 211835 ~ 231061 (+) True G181782
TU246223 lncRNA downstream 7867 300118 ~ 306312 (+) True LOC111195150
TU246229 lncRNA downstream 40329 332580 ~ 333245 (+) True G181811
TU246234 lncRNA downstream 140288 432539 ~ 433567 (+) True G181816
TU246238 lncRNA downstream 152830 445081 ~ 445298 (+) True G181820
TU246239 lncRNA downstream 200347 492598 ~ 500981 (+) True G181821
XM_022681623.1 mRNA upstream 24230 258891 ~ 264780 (+) False LOC111195169
XM_022681622.1 mRNA upstream 24230 258893 ~ 264780 (+) True LOC111195169
XM_022681620.1 mRNA upstream 32827 250476 ~ 256183 (+) True LOC103031511
XM_022681619.1 mRNA upstream 41690 245466 ~ 247320 (+) True LOC111195167
XM_007229284.2 mRNA upstream 81996 202308 ~ 207014 (+) True LOC103027206
XM_022681574.1 mRNA downstream 7844 300095 ~ 306096 (+) False LOC111195150
XM_022681624.1 mRNA downstream 15426 307677 ~ 315123 (+) True LOC103032143
XM_015604221.2 mRNA downstream 33385 325636 ~ 329837 (+) False LOC103032759
XM_022681627.1 mRNA downstream 33385 325636 ~ 329585 (+) False LOC103032759
XM_022681626.1 mRNA downstream 33386 325637 ~ 329837 (+) True LOC103032759
TU246214 other upstream 2729 282076 ~ 286281 (+) True G181801
TU246212 other upstream 10837 276671 ~ 278173 (+) True G181799
TU246178 other upstream 89014 191957 ~ 199996 (+) True G181779
TU246236 other downstream 99363 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2166043 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2233518 2525769 ~ 2569294 (+) True LOC111195173
TU246909 other downstream 2964116 3256367 ~ 3258850 (+) True G182356
TU246914 other downstream 2995687 3287938 ~ 3290258 (+) True G182361

Expression Profile