RNA id: XM_022681574.1


Basic Information

Item Value
RNA id XM_022681574.1
length 554
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC111195150
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 300095 ~ 306312 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTACGGGCCAATATAAAGCAGCAGATCTCCCATAGCATGAGCACTGAACTTCATCAACACCGCCACTTCATCTATACACTCCAGCGTCAAATACAGACACTTCTTCAGATTCATCATGAAATCCCTCGTTTTGTTGGCATGTGTCATTGGAGTGGCCCTCTGCGCTCCGCAAATGCTGTACTACGAGTTGGAGTACAAGCCCGTCCGTGTGGCTCCACAGGCTCTTGCTGCCCCGGGTGCCCCggtcgctgctgctgctgccgtgCCCTCTGAGGTGGAGATCCTCCTGGCTCAGCAGGCAGCTGCAGCTCACgCCCTTCCTGCTCGTGGCTTCATCAAACACGAGATTCCCCAGCCTGCAGGCAGAGATAGCATTGAAGTTCTCTACCCATTCGGCTTTGCTCCCGCTGCCCCAGCCGCACCTGCTGTCCCAGTTGCCCCTGTAGCTCCTGTTGCCCGGGCCCCTCTTCCCAggagtgatgatgatgatgagaacGATGACTAAAAACAGacaatCTGATGAGAAGCTGACTACTACACTTAAAagctaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246216 lncRNA upstream 7844 289010 ~ 292251 (+) True LOC111195149
TU246215 lncRNA upstream 17291 282369 ~ 282804 (+) True G181802
TU246213 lncRNA upstream 20305 279565 ~ 279790 (+) True G181800
TU246210 lncRNA upstream 26262 271554 ~ 273833 (+) True G181798
TU246208 lncRNA upstream 30838 268702 ~ 269257 (+) True G181797
TU246229 lncRNA downstream 26484 332580 ~ 333245 (+) True G181811
TU246234 lncRNA downstream 126443 432539 ~ 433567 (+) True G181816
TU246238 lncRNA downstream 138985 445081 ~ 445298 (+) True G181820
TU246239 lncRNA downstream 186502 492598 ~ 500981 (+) True G181821
TU246362 lncRNA downstream 323811 629907 ~ 663519 (+) True G181927
XM_022681573.1 mRNA upstream 8553 289336 ~ 291542 (+) False LOC111195149
XM_022681623.1 mRNA upstream 35315 258891 ~ 264780 (+) False LOC111195169
XM_022681622.1 mRNA upstream 35315 258893 ~ 264780 (+) True LOC111195169
XM_022681620.1 mRNA upstream 43912 250476 ~ 256183 (+) True LOC103031511
XM_022681619.1 mRNA upstream 52775 245466 ~ 247320 (+) True LOC111195167
XM_022681624.1 mRNA downstream 1581 307677 ~ 315123 (+) True LOC103032143
XM_015604221.2 mRNA downstream 19540 325636 ~ 329837 (+) False LOC103032759
XM_022681627.1 mRNA downstream 19540 325636 ~ 329585 (+) False LOC103032759
XM_022681626.1 mRNA downstream 19541 325637 ~ 329837 (+) True LOC103032759
XM_022681628.1 mRNA downstream 26034 332130 ~ 341442 (+) True LOC103042564
TU246214 other upstream 13814 282076 ~ 286281 (+) True G181801
TU246212 other upstream 21922 276671 ~ 278173 (+) True G181799
TU246178 other upstream 100099 191957 ~ 199996 (+) True G181779
TU246236 other downstream 85518 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2152198 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2219673 2525769 ~ 2569294 (+) True LOC111195173
TU246909 other downstream 2950271 3256367 ~ 3258850 (+) True G182356
TU246914 other downstream 2981842 3287938 ~ 3290258 (+) True G182361

Expression Profile