RNA id: TU246229


Basic Information

Item Value
RNA id TU246229
length 430
lncRNA type intronic
GC content 0.38
exon number 3
gene id G181811
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 332580 ~ 333245 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaccctacacctaacactaaccttaacccttaatcaaccctaaaatcgaaccctacacctaaccctaaccttaacccttaatcaaccctaaaatcaaaccctacacctaaccctaaccttaacccttaatcaaccctaaaatcaaaccctacacctaaccctaaccttaacccttaatcaaccataaaatcaaaccctacacctaaccctaaccttaacccttaatcaaccataaaatcaatccctacacctaaccctaacctaaccttaacccttaatcaaccctaaaatctaaccctacacctaaccctaaccttaacccttaatcaaccctaaaatctaaccctacacctaaccctaaccttaacctaagcttaaaatctaaccctaaacccaatcctaaaatattaagataagagtttggattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246223 lncRNA upstream 26268 300118 ~ 306312 (+) True LOC111195150
TU246216 lncRNA upstream 40329 289010 ~ 292251 (+) True LOC111195149
TU246215 lncRNA upstream 49776 282369 ~ 282804 (+) True G181802
TU246213 lncRNA upstream 52790 279565 ~ 279790 (+) True G181800
TU246210 lncRNA upstream 58747 271554 ~ 273833 (+) True G181798
TU246234 lncRNA downstream 99294 432539 ~ 433567 (+) True G181816
TU246238 lncRNA downstream 111836 445081 ~ 445298 (+) True G181820
TU246239 lncRNA downstream 159353 492598 ~ 500981 (+) True G181821
TU246362 lncRNA downstream 296662 629907 ~ 663519 (+) True G181927
TU246369 lncRNA downstream 342674 675919 ~ 676207 (+) True G181934
XM_015604221.2 mRNA upstream 2743 325636 ~ 329837 (+) False LOC103032759
XM_022681626.1 mRNA upstream 2743 325637 ~ 329837 (+) True LOC103032759
XM_022681627.1 mRNA upstream 2995 325636 ~ 329585 (+) False LOC103032759
XM_022681624.1 mRNA upstream 17457 307677 ~ 315123 (+) True LOC103032143
XM_022681574.1 mRNA upstream 26484 300095 ~ 306096 (+) False LOC111195150
XM_022681629.1 mRNA downstream 44983 378228 ~ 426514 (+) True tacr3
XM_007235683.3 mRNA downstream 130078 463323 ~ 475354 (+) True bdh2
XM_022681630.1 mRNA downstream 142426 475671 ~ 495422 (+) True LOC103047018
XM_022681631.1 mRNA downstream 176406 509651 ~ 540134 (+) True suclg1
XM_007234577.3 mRNA downstream 814853 1148098 ~ 1153043 (+) True lrrtm1
TU246214 other upstream 46299 282076 ~ 286281 (+) True G181801
TU246212 other upstream 54407 276671 ~ 278173 (+) True G181799
TU246178 other upstream 132584 191957 ~ 199996 (+) True G181779
TU246236 other downstream 58369 391614 ~ 392130 (+) True G181818
TU246772 other downstream 2125049 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 2192524 2525769 ~ 2569294 (+) True LOC111195173
TU246909 other downstream 2923122 3256367 ~ 3258850 (+) True G182356
TU246914 other downstream 2954693 3287938 ~ 3290258 (+) True G182361

Expression Profile