RNA id: XM_007229283.3


Basic Information

Item Value
RNA id XM_007229283.3
length 832
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC103026712
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 45736 ~ 48294 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGATTCCTCACAGCTCTCAGACACTCCAGAATCTGCTCAGTCTGCAGAGCTCCAGAACGTAACGGCTGCAGAATCTCCACAAAGGCTCAACAATCTTCAGAAACTCTTCAGAATCGCCTCCATTTCCAGAACCTGAAGTCTACAGAACCTGCAGAATCTTCAGAAACTCCAAAAGTCTCCAGAATCTCCACTATCCGAAGCAGAATGAAGTGCATAGTTGTGTGCGTTTCTTTACTGACGGTCTTCTTCACTCTGGCTGAAGGTATGAGTCTTCATGGGCTGGGTGTAGAACCACGGTGTCGCTGCAGTGGAACCGAAAGCAGACGGATCGGCAAACTGATCGAGAGCATAGAGCTCTTCCCTCCAAACCCCCACTGCAAAGACACTGAGATCATTGCGACATTGAAGAGCAACGGTCAGGAGATCTGTCTGGATCCTAAAGCACCTTgggtcacaaaagtgattgagAAGATTTTGGCCAAACGGTCATCGTAAAGCCCAACTCTCTTCTCGTCCGGCGCGGGACTCCTTAGGGCCTGTGGTCCTTCCATCTTCTTCTGACCCTCACTCTCAAATCAGACAGAGCACTGAGGaggatgattatttttttattcatcagTATTTATATAATATCTATTGTTATTTATTCGTTAATTCTGCATTAATACACAGTGTTTATGTACGGTGTGTAAATATTGTACAAGTTCACACAGTTCTCACACAGGAGTTTTTATTAAGACAtggcattattttttattgcttatTGTTAATTCTGTATTGttcttatatgttttatatacgttaataaaagaaatacttttttaaaaaaca

Function

GO: NA

KEGG:

id description
K05505 CXCL1_2_3, GRO; C-X-C motif chemokine 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246265 lncRNA upstream 44671 92965 ~ 94589 (-) True G181846
TU246272 lncRNA upstream 172448 220742 ~ 262756 (-) True G181853
TU246277 lncRNA upstream 193392 241686 ~ 242173 (-) True G181858
XR_002651497.1 lncRNA upstream 274337 322631 ~ 323782 (-) True LOC111195159
TU246316 lncRNA upstream 346682 394976 ~ 395203 (-) True G181888
XM_022681589.1 mRNA downstream 10223 28644 ~ 35513 (-) True LOC111195164
XM_022681590.1 mRNA downstream 10234 28644 ~ 35502 (-) False LOC111195164
XM_007229290.3 mRNA downstream 34535 8 ~ 11201 (-) True LOC103030254
XM_022681597.1 mRNA upstream 61470 109764 ~ 190741 (-) True LOC103030885
XM_022681608.1 mRNA upstream 61470 109764 ~ 176936 (-) False LOC103030885
XM_022681599.1 mRNA upstream 61470 109764 ~ 176936 (-) False LOC103030885
XM_022681610.1 mRNA upstream 61470 109764 ~ 176935 (-) False LOC103030885
XM_022681609.1 mRNA upstream 61470 109764 ~ 176935 (-) False LOC103030885
TU246326 other upstream 445896 494190 ~ 508014 (-) True cisd2
TU246325 other upstream 453059 501353 ~ 508014 (-) False cisd2
trnai-aau_12 other upstream 1479732 1528026 ~ 1528099 (-) True trnai-aau_12
XR_002651506.1 other upstream 1538958 1587252 ~ 1709924 (-) False LOC103021730
XR_002651509.1 other upstream 3394272 3442566 ~ 3454586 (-) True LOC103039001

Expression Profile