RNA id: TU246316


Basic Information

Item Value
RNA id TU246316
length 228
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G181888
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 394976 ~ 395203 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACTACCAAACCAAaaaagaccagctaaaccacctATGCCataagaccagctaaaccaccaACACAaaaagaccagctaaaccatctaTGCTATAAGACCAGCGAAACCACCAACCCAAaaaagaccagctaaaccatctaTGCTATatgaccagctaaaccatcaaccCAAaaaagaccagctaaaccatctaTGCTataagaccagctaaaccatcaaccCAAaa

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651497.1 lncRNA downstream 71194 322631 ~ 323782 (-) True LOC111195159
TU246272 lncRNA downstream 132220 220742 ~ 262756 (-) True G181853
TU246277 lncRNA downstream 152803 241686 ~ 242173 (-) True G181858
TU246265 lncRNA downstream 300387 92965 ~ 94589 (-) True G181846
TU246318 lncRNA upstream 15023 410226 ~ 410543 (-) True G181890
TU246319 lncRNA upstream 18249 413452 ~ 413862 (-) True G181891
TU246321 lncRNA upstream 30234 425437 ~ 425995 (-) True G181893
TU246322 lncRNA upstream 30859 426062 ~ 429534 (-) True G181894
TU246323 lncRNA upstream 34747 429950 ~ 430644 (-) True G181895
XM_022681621.1 mRNA downstream 124616 264960 ~ 270360 (-) True LOC111195168
XM_022681617.1 mRNA downstream 163847 207651 ~ 231129 (-) False rps6kb2
XM_022681618.1 mRNA downstream 163847 207651 ~ 231129 (-) True rps6kb2
XM_007229285.3 mRNA downstream 194997 191958 ~ 199979 (-) True LOC103027497
XM_007235685.3 mRNA upstream 107004 502207 ~ 508064 (-) False cisd2
XM_022681632.1 mRNA upstream 557796 952999 ~ 1099800 (-) True ctnna2
XM_007229281.3 mRNA upstream 984290 1379493 ~ 1390551 (-) True LOC103026423
XM_022681637.1 mRNA upstream 985490 1380693 ~ 1390550 (-) False LOC103026423
XM_022681638.1 mRNA upstream 1018866 1414069 ~ 1421243 (-) True LOC103024763
TU246258 other downstream 346761 45841 ~ 48215 (-) False LOC103026712
TU246326 other upstream 98987 494190 ~ 508014 (-) True cisd2
TU246325 other upstream 106150 501353 ~ 508014 (-) False cisd2
trnai-aau_12 other upstream 1132823 1528026 ~ 1528099 (-) True trnai-aau_12
XR_002651506.1 other upstream 1192049 1587252 ~ 1709924 (-) False LOC103021730
XR_002651509.1 other upstream 3047363 3442566 ~ 3454586 (-) True LOC103039001

Expression Profile