RNA id: TU246448


Basic Information

Item Value
RNA id TU246448
length 1828
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id LOC111195170
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 1547201 ~ 1554782 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcggggctaagctcattctgaaaaacacatcgtccttaactgtaaattcgaattaatggataaaatcgattaattgcccagctctagtgtaaacacacccaagGCCCAATTAAAACAGATGACAACAAATCGTATCACTCAGACCACGTTCCAATCTGATTAGGACACTGGTACTAGTGACATGACGTGACCCAGGTGTAAACTGAGCAATTGGGGATCAATTTGTTTAGTGTTTGGTCACTGGCATAATGTTTATGATCTGATGCTATATTTCTGTTAACTCTtgcttacatttacatttgctgctttttaaatgttttaatttgatcCTCAAATATTTGCCAACATTTAAGGAGAATGAGATAAAGAGGGTGATCAGctggatatataaatatacagtaccagtcaaaagtttggacacgcctcCAATAATAACAGTGTTtcgttattttaaaaaatgtttctgcATTGTGATTAAAACTCATCTtctaagtcatccaaactatgaagcaAAACATccgtaattatttatttaacaaagtagaatattttagattcttcagagTAGGCATCTTGGTAAGAAAAggttactttaagaaatgaaggtcagtcaatcaaaaaaatgtcaaatttgAATGTAGGTGTAGTCGCAAAGGCCATCAAAATAATCTAacgaaactggctctcatcaggaccgccccaggagaggaagagcaagcattacctctgttgcacaagataagtttatcagagttaccaacctcagaaaccgcaagttagcAGCTCcctagataagagcatctaaaagcttcttatttttatttagtttggtttgtttaacacttttaagttactgcataattcaatatgtgttccttcatagtctggatgacttaagtattaatttataatgtagatttaaaaataatacattcagtaaaaacattgaataagacagtgtgtccaaacttttaactcgTACTGTATATGGTTaattagagctgggcaatatgactatattttatgatattgtgatcttttttttttttcttgtgtcgACAGTATGTTTTTTTGAAGCATATTGAgatttgttaaatgttaaaagaaCAACACTGACCCCAACtggtacatttcattacagaaacagtaaacaaatgGATGATGTGCAgctaaaataacagttttaaagCAGTTGAATgtcaaaataattacaaataaataatacaaattatatacagggaaaaatatttgttgaaaATATCATGGTATTGTTTtacatatcgcccagctctatggTTAATGACATCACACGCAGTAAAGGAAgtacgatttttaaaaaaaatcagaattgaattgaaattgaTTGTTGAGTCGAAATCAGCTCAAGCTGTTGCTCTTAATACATTGGTTACCTCCTCAAGAATCTTCTAGAATGGTGTCATTAAGCTTCTACGCTGACATAGCCGCGAATGTGGGGGAGGTGTGTGTAGAGGAATCTACTTGTATCCATTGTGTACTGGTTTGTACTGGTTGGATGAACGTTATTACTTCACAACACAGCTGAGAAAAGGCTGCATCCGTCTTTAATCATGCCTGATTGATTGTTTCTGAAGCTAAATTCTTGGATGGTTGTTGCTGGGTTGAAGTAATGATGTGAAAGACGAGCGTGTGGAAGGTGAACTTTagactctgaattatttaaggCTGATgggaatgcattttttttgttttgttttgtttcttttatttgttttcttttttgtgattgAGTAATGGCCTTTTTATTTGCCGTCTGCATAAAGTGTCATTGCAGCATCTGCATTAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246429 lncRNA upstream 168982 1375197 ~ 1378219 (+) True G181982
TU246428 lncRNA upstream 168982 1376360 ~ 1378219 (+) False G181982
TU246391 lncRNA upstream 553232 915260 ~ 993969 (+) True LOC103046702
TU246395 lncRNA upstream 623023 918330 ~ 924178 (+) True G181955
TU246392 lncRNA upstream 624572 915260 ~ 922629 (+) False LOC103046702
XR_002651505.1 lncRNA downstream 2411 1551439 ~ 1554782 (+) False LOC111195170
XR_002651503.1 lncRNA downstream 2438 1551466 ~ 1554782 (+) False LOC111195170
TU246443 lncRNA downstream 2519 1551547 ~ 1554782 (+) False LOC111195170
TU246475 lncRNA downstream 6573 1555601 ~ 1555846 (+) True G182006
TU246482 lncRNA downstream 40926 1589954 ~ 1592276 (+) True G182012
XM_022681652.1 mRNA upstream 2840 1529116 ~ 1544361 (+) True LOC103023290
XM_022681651.1 mRNA upstream 19801 1518679 ~ 1527400 (+) True exosc9
XM_022681644.1 mRNA upstream 29853 1447702 ~ 1517348 (+) False LOC103024236
XM_022681645.1 mRNA upstream 29853 1447702 ~ 1517348 (+) False LOC103024236
XM_022681642.1 mRNA upstream 29853 1447702 ~ 1517348 (+) False LOC103024236
XM_022681660.1 mRNA downstream 17912 1566940 ~ 1570671 (+) True LOC111195172
XM_022681659.1 mRNA downstream 19060 1568088 ~ 1570670 (+) False LOC111195172
XM_007229270.3 mRNA downstream 22914 1571942 ~ 1575056 (+) True LOC103022979
XM_022681658.1 mRNA downstream 30215 1579243 ~ 1582834 (+) True LOC111195171
XM_007229261.2 mRNA downstream 564755 2113783 ~ 2122581 (+) True frg1
TU246236 other upstream 1155071 391614 ~ 392130 (+) True G181818
TU246214 other upstream 1260920 282076 ~ 286281 (+) True G181801
TU246212 other upstream 1269028 276671 ~ 278173 (+) True G181799
TU246178 other upstream 1347205 191957 ~ 199996 (+) True G181779
TU246772 other downstream 909266 2458294 ~ 2460322 (+) False LOC103029952
TU246773 other downstream 976741 2525769 ~ 2569294 (+) True LOC111195173
TU246909 other downstream 1707339 3256367 ~ 3258850 (+) True G182356
TU246914 other downstream 1738910 3287938 ~ 3290258 (+) True G182361
TU247191 other downstream 2874885 4423913 ~ 4431946 (+) True G182577

Expression Profile