RNA id: TU246855


Basic Information

Item Value
RNA id TU246855
length 245
lncRNA type intronic
GC content 0.50
exon number 1
gene id G182316
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 2844127 ~ 2844371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCCTCGGCCTCGGGAACAGACACTGAGCTGAAAGTGAACTCTGGAGACAGGAAGTGATCGTCTGTGTGCAGCACGACCTGCTTTCAGCCTCCTGCTGGATCACAGACCACCAtcacagagagacagggagagagacagggagagagacagcaaaATGAATCTGAGACCACATAAAGAGAAAACAGTACTAGAGAATAGataggtggctgctgtggtattaCAGCTGTTTGATGGAGTGTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246854 lncRNA upstream 47905 2794915 ~ 2796222 (+) True G182315
TU246794 lncRNA upstream 220360 2623342 ~ 2623767 (+) False G182268
TU246796 lncRNA upstream 220360 2623342 ~ 2623767 (+) True G182268
TU246774 lncRNA upstream 282002 2525769 ~ 2562125 (+) False LOC111195173
XR_002651507.1 lncRNA upstream 311350 2525683 ~ 2532777 (+) False LOC111195173
TU246821 lncRNA downstream 33319 2877690 ~ 2936657 (+) True G182287
TU246858 lncRNA downstream 42144 2886515 ~ 2887312 (+) True G182318
TU246874 lncRNA downstream 134682 2979053 ~ 2979366 (+) True G182334
TU246885 lncRNA downstream 270516 3114887 ~ 3115698 (+) True G182343
TU246902 lncRNA downstream 386517 3230888 ~ 3269218 (+) True G182351
XM_007232597.3 mRNA upstream 383455 2457564 ~ 2460672 (+) True LOC103029952
XM_007229261.2 mRNA upstream 721546 2113783 ~ 2122581 (+) True frg1
XM_007229262.2 mRNA upstream 721546 2113783 ~ 2122581 (+) False frg1
XM_022681658.1 mRNA upstream 1261293 1579243 ~ 1582834 (+) True LOC111195171
XM_007229270.3 mRNA upstream 1269071 1571942 ~ 1575056 (+) True LOC103022979
XM_022681662.1 mRNA downstream 167300 3011671 ~ 3147270 (+) True LOC103022435
XM_022681663.1 mRNA downstream 333261 3177632 ~ 3266112 (+) True LOC103043954
XM_022681666.1 mRNA downstream 333261 3177632 ~ 3266112 (+) False LOC103043954
XM_022681667.1 mRNA downstream 333261 3177632 ~ 3266112 (+) False LOC103043954
XM_022681668.1 mRNA downstream 333261 3177632 ~ 3266112 (+) False LOC103043954
TU246773 other upstream 274833 2525769 ~ 2569294 (+) True LOC111195173
TU246772 other upstream 383805 2458294 ~ 2460322 (+) False LOC103029952
TU246236 other upstream 2451997 391614 ~ 392130 (+) True G181818
TU246214 other upstream 2557846 282076 ~ 286281 (+) True G181801
TU246212 other upstream 2565954 276671 ~ 278173 (+) True G181799
TU246909 other downstream 411996 3256367 ~ 3258850 (+) True G182356
TU246914 other downstream 443567 3287938 ~ 3290258 (+) True G182361
TU247191 other downstream 1579542 4423913 ~ 4431946 (+) True G182577
TU247365 other downstream 2091237 4935608 ~ 4941130 (+) False LOC103029349
trnai-aau_13 other downstream 2331465 5175836 ~ 5175908 (+) True trnai-aau_13

Expression Profile