RNA id: TU246996


Basic Information

Item Value
RNA id TU246996
length 2587
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G182423
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3230888 ~ 3294956 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTCAGTCCCAAACTGAGGTAATTTCgcttttttcccctcttccCAAAAAATGTCCAGTGCTGAATTTTTGCATAAGGTTCCTTCTAGATTGTTTGGGAATGTTTTGGCACACGGATGGTATTTATGAGCgaagaaaaacacaaagaaagaaagaaagaacgaaagaaagaaaaactcaaAGCGATGAGTCGGTGAGCAGAGACAAGACTTTATAAGTCTTTATAagtcgatatatatatatgtgacaatacaaaacaaatgaacaaacgaacaaacaaacgaaaaaaaaaaaacaataataatcaaacTGGTGAAGCTTCTGAAAGCAAACGCAAACCAGAAAAGTGCAGAAAACTCAAATCACTCACAGCTAATGTGTTTAAGGTGCTTTAAAGATTGCTGTTAAATCTGTcgatccaacacacacacacacaatcacacacacttgtacatcacaaacaaaaaaacataataaaaatacatgagTTTAACACAGTGAGGCTACACACTCCATGTGCAGAAAATACTCTCAATACTGAATCGCTGTAACATTTTCAACCTTTCAAATCGAACAAAACTGGCGTAAAAATGAGCACTTTTATAAAACGTAATATTCCTCAAACTACTCTGTGAAGCCTGTTATATTGTGCGTCGTCGTTTTACAAAGTGAGATTCGTGATTAAAGCCACGTCGTGGAGCGCCAattatgaaagaaaaaaaaaaaagaagtgaaagagtgacagaaaaagggaaaaaacgaACTTTCCTTTTCCATacagatttttccatttttcatcCTAACATTTAAGCCAGCTCAACTTCACTTAACTCGAATTTCGATTGTGGGCTGGTAAAAACGTTACAAACACCAGAAGAACCACAGTAAATCTCTGTTActagacagcagcagcagcaacaaaaaaaaaaaatctggctgctgattggcttaataaaaagtgactGACATCAAAAAGCagttgtttgattgattgatttcagTCTAAACCGATGACATAAAATGTCATATCCCAAGCCCTTTGCTTTCGCCCACTGGTTCTCTGGCTTGCACAAGCATGAGGTGCAtaataaacaaggaaaaaaacGTGGAATCGTCTGTTCCCACAATGCACATAGTCACATTTTGTTCACCGTGATGCATCGTGTCATGTTGCTTTGTTACAGCCCTAATGTTGTCTgattgttaaaaaatacaaaatacagtggTTATATCTGTGTGTTGTCATAGGGAGCCCTGGTTTCTTACAATGGACAGTTTCATACTAAACCATAtctaaatgactgtttatatCGAAATCACTGAAGTTATGAAGACGTTTCAAGAAATGTCCAGTAGTAGTCAAGGGGACAAGTCTTGAAGACATTTCGAAAAAATAATGGACCATTTATTGCTCCATCCACAACCACAACTCTCTGTAGGTACTGTAAATAGattataaagtttataaagttGATATTTCAGaccttttaaatcttaaattcTTCGcccacaaacacattttatcatAGAGTGGTCTCTACCAAACGTTTGAACGTGTCCTATGGTATATATGGCACTAAAAGATTAGCAGATTGGTCCTGCCTATACGTCTATGCCCGTCAGCTGATTTatcatgacttaatttcaagatggcggcacTGGAGATctatctgaaggtactgtgtgtataaacaatgttttttaagtgAACTTTAGTCAACATCTGTGCCTTCataattctaccaatgaagtttggagcaaCTTTAAGTTTGTTATTGGTGTGAAATAGCAATTTCTTAGCATGAGCAAatttatgcccctatcactagcattgtaaacctgttggcagcatcagctaaaagtgctgtatttcagaatgcagGGGGTGAACGGAGGCGAACTATTAGACAAAAGTTCATACTTATTATcatatgtttcactacacccaagtccatttcacaccagacttCTCCTTTAAGGAACCTCCAGTTGGTGGCTTGAATGGCTTATCTGTTCGCCGCCGATCccaatcattaccatccactgagCTCGCTGTCTACATGGGGTGGGAATCACAATACTATAATAACGATACATTGTGATACTCGATATATTGCAAGACAATCGTTTCCGAAGAGGataaaaaaacttctaaataagaaattattattttatgcatttattggtgtcagtttcacataaTTTGACAGCCAATATGCTtcattgcagtttttttttttaccatatttatttgattatagcgccaccttGTGTCGTAATGAAGCACTAACTTTAGGAAAGTCTAATTGGGGACGAGTTTTAAGGAGAGCGCCTATGTTTCAATAGAAATACAGATATTTGACACCACATATcaaaaaatgatgggtttctttaattttacaaaaaaaaaaacaaaaaaaaaactcgaatataatcaagaggaagatggatgatcacaaaccaccaaactgaactgcttaaatgtttgcaccaggagtgcaggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgattaaaaactgtgattaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651508.1 lncRNA downstream 40746 3168736 ~ 3190142 (-) True LOC111195174
TU246973 lncRNA downstream 195381 3025175 ~ 3035507 (-) True G182404
TU246869 lncRNA downstream 431730 2791274 ~ 2799158 (-) True G182329
TU246814 lncRNA downstream 652158 2578470 ~ 2578730 (-) True G182281
TU246801 lncRNA downstream 719769 2490408 ~ 2511119 (-) True G182273
XR_453051.2 lncRNA upstream 99 3268986 ~ 3282130 (-) False LOC103042415
XR_001518279.2 lncRNA upstream 99 3268986 ~ 3282130 (-) True LOC103042415
TU247043 lncRNA upstream 95525 3364412 ~ 3424861 (-) True G182467
TU247051 lncRNA upstream 126232 3395119 ~ 3443301 (-) False LOC103039001
TU247060 lncRNA upstream 168409 3437296 ~ 3439756 (-) True G182481
XM_007243336.3 mRNA downstream 73380 3148161 ~ 3157508 (-) False tlr3
XM_007243335.3 mRNA downstream 73381 3148161 ~ 3157507 (-) True tlr3
XM_022682129.1 mRNA downstream 569662 2566363 ~ 2661226 (-) True LOC103028260
XM_022681656.1 mRNA downstream 1520964 1585495 ~ 1709924 (-) False LOC103021730
XM_007232798.3 mRNA upstream 32533 3301420 ~ 3306306 (-) True ankrd37
XM_007232796.3 mRNA upstream 68944 3337831 ~ 3341350 (-) True LOC103040979
XM_007232801.3 mRNA upstream 116678 3385565 ~ 3389256 (-) True helt
XM_022681683.1 mRNA upstream 835934 4104821 ~ 4155603 (-) True pcdh10
XM_022681684.1 mRNA upstream 835934 4104821 ~ 4155602 (-) False pcdh10
XR_002651506.1 other downstream 1520964 1587252 ~ 1709924 (-) False LOC103021730
trnai-aau_12 other downstream 1702789 1528026 ~ 1528099 (-) True trnai-aau_12
TU246326 other downstream 2722874 494190 ~ 508014 (-) True cisd2
TU246325 other downstream 2722874 501353 ~ 508014 (-) False cisd2
TU246258 other downstream 3182673 45841 ~ 48215 (-) False LOC103026712
XR_002651509.1 other upstream 173679 3442566 ~ 3454586 (-) True LOC103039001
TU247085 other upstream 278746 3547633 ~ 3550413 (-) True G182501
TU247548 other upstream 1911636 5180523 ~ 5213151 (-) False G182810
TU247634 other upstream 2017101 5285988 ~ 5295716 (-) False LOC111195184
TU247875 other upstream 2842483 6111370 ~ 6113092 (-) True G183043

Expression Profile