RNA id: TU247122


Basic Information

Item Value
RNA id TU247122
length 641
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G182530
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 3909903 ~ 3917616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTGCTCAATCTAGGCTGTATcctttgaagaaaaaaaaaggacttttatgTTGAAACTTATGAGACTCTtatgagacttttattttgaaacttgTTGAGTAACAGGAACAGGAAGTAGCATATGAATGCAAGATTTTGCTTTGTCATTCTGATAACTTTGAATGAGCACACTAGTGGAGTGTAATGTGATGCTCGGAAGTTAATCAAGGGGTTTATTTAAAGTGTAAGCTGTTTGGGAAGGCCACTGGTGAGTgaaatcatgtttatttcattttgtgtAAGAAGACATTTGTTGAtagatttaaaatgtatgttgcTGGAAGTGATAAGTGTAATGCTAATTTCATGCTTAGAGATGTTAAGATTAATGTAGCTAAGATGTATGTAGCTCTATTTCTTACTCATTCAGTTGATATTAAGGATTTAGTAAGTTTATATGGtgtccttttttctttatttgaaaGGTTTTCAACCTGATTCTACCTGATTCGTTTTGTTTCTACCTCATTCAACCTTAttgatgttaaaataaaaaaccaaGAAAGGAAGAATCCGAGTTGATCCATGATTGCCCCCCGACAACTTATGCCTTTTTCAAGTTTGGGCTGATTTTAAATATAACACCCCCGGGAAACttgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247098 lncRNA upstream 195083 3714609 ~ 3714820 (+) True G182511
TU247097 lncRNA upstream 243406 3666219 ~ 3666497 (+) True G182510
TU247096 lncRNA upstream 243800 3665861 ~ 3666103 (+) True G182509
TU247094 lncRNA upstream 249411 3660229 ~ 3660492 (+) True G182507
TU247074 lncRNA upstream 382930 3526280 ~ 3526973 (+) True G182492
TU247162 lncRNA downstream 240744 4158360 ~ 4158802 (+) True G182566
TU247164 lncRNA downstream 240744 4158360 ~ 4158802 (+) False G182566
TU247165 lncRNA downstream 240744 4158360 ~ 4158802 (+) False G182566
TU247192 lncRNA downstream 452301 4369917 ~ 4425382 (+) False G182577
TU247215 lncRNA downstream 458765 4376381 ~ 4392378 (+) True G182592
XM_022681680.1 mRNA upstream 82138 3815403 ~ 3827765 (+) True pcdh18
XM_007232786.3 mRNA upstream 359378 3536363 ~ 3550525 (+) True LOC103037959
XM_007232787.3 mRNA upstream 359378 3540843 ~ 3550525 (+) False LOC103037959
XM_022681679.1 mRNA upstream 374851 3524196 ~ 3535052 (+) True LOC103037633
XM_022681677.1 mRNA upstream 472859 3399192 ~ 3437044 (+) False LOC103038692
XM_022682131.1 mRNA downstream 478199 4395815 ~ 4423038 (+) True sclt1
XM_022681687.1 mRNA downstream 557117 4474733 ~ 4479749 (+) True LOC103036009
XM_007238222.3 mRNA downstream 580421 4498037 ~ 4506712 (+) True LOC103036626
XM_022681691.1 mRNA downstream 1017967 4935583 ~ 4941130 (+) False LOC103029349
XM_022681690.1 mRNA downstream 1017968 4935584 ~ 4941134 (+) True LOC103029349
TU246914 other upstream 619645 3287938 ~ 3290258 (+) True G182361
TU246909 other upstream 651053 3256367 ~ 3258850 (+) True G182356
TU246773 other upstream 1340609 2525769 ~ 2569294 (+) True LOC111195173
TU246772 other upstream 1449581 2458294 ~ 2460322 (+) False LOC103029952
TU246236 other upstream 3517773 391614 ~ 392130 (+) True G181818
TU247191 other downstream 506297 4423913 ~ 4431946 (+) True G182577
TU247365 other downstream 1017992 4935608 ~ 4941130 (+) False LOC103029349
trnai-aau_13 other downstream 1258220 5175836 ~ 5175908 (+) True trnai-aau_13
trnai-aau_14 other downstream 1288470 5206086 ~ 5206159 (+) True trnai-aau_14
TU247511 other downstream 1509251 5426867 ~ 5427255 (+) True G182790

Expression Profile