RNA id: TU247162


Basic Information

Item Value
RNA id TU247162
length 389
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G182566
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4158360 ~ 4158802 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caactagattgcagttcctacagaaactgcgagtgtgattgcagtgctggctggtatctgctatggtgttgctaaggtgttgctaagtggttgctaaggtgttgctatcgtatccagggtggttgctaaggtgttgctaagtggttgctaggtggttgctaaggtgttgctaggtggttgctaaggtgttgcaatggtatccggggtggttgctaaggtgttgctaggtggttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggttgctagggtgttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggtggctaaggtgttgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247122 lncRNA upstream 240744 3909903 ~ 3917616 (+) True G182530
TU247098 lncRNA upstream 443540 3714609 ~ 3714820 (+) True G182511
TU247097 lncRNA upstream 491863 3666219 ~ 3666497 (+) True G182510
TU247096 lncRNA upstream 492257 3665861 ~ 3666103 (+) True G182509
TU247094 lncRNA upstream 497868 3660229 ~ 3660492 (+) True G182507
TU247192 lncRNA downstream 211115 4369917 ~ 4425382 (+) False G182577
TU247215 lncRNA downstream 217579 4376381 ~ 4392378 (+) True G182592
TU247213 lncRNA downstream 277751 4436553 ~ 4437168 (+) True G182591
TU247220 lncRNA downstream 279182 4437984 ~ 4442647 (+) True G182597
TU247224 lncRNA downstream 289879 4448681 ~ 4453032 (+) True G182600
XM_022681680.1 mRNA upstream 330595 3815403 ~ 3827765 (+) True pcdh18
XM_007232786.3 mRNA upstream 607835 3536363 ~ 3550525 (+) True LOC103037959
XM_007232787.3 mRNA upstream 607835 3540843 ~ 3550525 (+) False LOC103037959
XM_022681679.1 mRNA upstream 623308 3524196 ~ 3535052 (+) True LOC103037633
XM_022681678.1 mRNA upstream 721316 3410173 ~ 3437044 (+) False LOC103038692
XM_022682131.1 mRNA downstream 237013 4395815 ~ 4423038 (+) True sclt1
XM_022681687.1 mRNA downstream 315931 4474733 ~ 4479749 (+) True LOC103036009
XM_007238222.3 mRNA downstream 339235 4498037 ~ 4506712 (+) True LOC103036626
XM_022681691.1 mRNA downstream 776781 4935583 ~ 4941130 (+) False LOC103029349
XM_022681690.1 mRNA downstream 776782 4935584 ~ 4941134 (+) True LOC103029349
TU246914 other upstream 868102 3287938 ~ 3290258 (+) True G182361
TU246909 other upstream 899510 3256367 ~ 3258850 (+) True G182356
TU246773 other upstream 1589066 2525769 ~ 2569294 (+) True LOC111195173
TU246772 other upstream 1698038 2458294 ~ 2460322 (+) False LOC103029952
TU246236 other upstream 3766230 391614 ~ 392130 (+) True G181818
TU247191 other downstream 265111 4423913 ~ 4431946 (+) True G182577
TU247365 other downstream 776806 4935608 ~ 4941130 (+) False LOC103029349
trnai-aau_13 other downstream 1017034 5175836 ~ 5175908 (+) True trnai-aau_13
trnai-aau_14 other downstream 1047284 5206086 ~ 5206159 (+) True trnai-aau_14
TU247511 other downstream 1268065 5426867 ~ 5427255 (+) True G182790

Expression Profile