RNA id: TU247191


Basic Information

Item Value
RNA id TU247191
length 1793
RNA type TUCP
GC content 0.51
exon number 9
gene id G182577
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4369917 ~ 4431946 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCACACTCTTCAGGTGAAATGATTATCATACCATACCAGTTCAAACCCCGCCCCCTTCTTCAGTGTGTACACCACTAACAGCATTCTGACACATTACATCATctttaaatacattcatttgAATTAAAACACCACCGGTCACCCCCTCCCCTCCGGTCGCCGCTGATGGAGGAGTGAAATGTAAACTTGCGGATTACATTCAAGCAGAAGTTCAAGTTTAAACGGATTCTTCCTCCTTCCTTACTTCAGATTATATCTATAGAAAAATTGGCAGTTGAGCGAGGCGGCTGTCGGACGTCTTACACTTCTCTACCCGAGATTCCCTTTATCCAGCATCCGTCCATTAATCCAACACGAGCCGAAGCTCCGAGAACTCCAGAAAAAAGGCTcagaaatagaagaaaaaaaaataaaacaaagaaaaaaaggcgAGAGGTTTTCACCATTTCTCCTCGGACCTCCACCTCGTCCACCTTAAGTACCTCAGTTCCTCGATCACCAGGAGGTGAAGAAGGGTCGTTTGCAGTGGAAGGTTTGGGTGAAGGCGTTGCCGAGCTGCACCACCCGTCCCTGGCCGCCTCCCCGGCTGCGCTCCACCACCACCCTCGGCATCTGGACCAGCTGAATGGGGCTCTTCCCGTCCTTCAGAGCCTGAGTCAGGTTCAGGATCTGCCCCCTCATAACGGACATCTGCTTCTCGAACATGGTTTTATCAAAGCCTTTATCCGtCTTAAAGAGCTCATAGAGGTCCTCACAGAGGTCCTGTACAAAGTTCATGTCGGAGATTCGGGATAGAACCAGGTCTCGGGTCTCCTGGGAGAACGGCACTTTAGCCTGCGGAAGCCACGCCCAGTGGAATgggtaTGCTCTCCACTCGTCTGGGTGTTTAAAGGGGAAGGCCAGGCCGTTATCGATCGCTGCGATCTGAATCGCACAGTCTTTGGGTTCACTCCATTCACttccCTTTTCAGATTGTTCTTCATCTCCTGCCTTCTCGTATTTAATCAGCCAGTTATCATTCCCTCTGTCTGTATTTCTGATCACATAGTCAAGAACCACAAGTCTCTCAAACTGAGACTGGAGCTGCTTCCTCATGTTCTCTGGAAGAGGCTCCGCCTCAAATTTCCTCAGCCAATAATCCGCCTCGTGGTAGCCCTCGACAAACAGCTGAAATGAGCCAACCTTGGGGGGCAGGCCGACCCGGTGGAATCGACGGCCCACTTTGGGAACTTTTTCCAGGGCGTATTTCTTTCCTCGAGACTTGGCCCGGTCGATGGCGTTGTAGTGGAAAGTCTCGCTGGCCAGAGACACAACctTGGTTTTGGGAACGACCTCCAGGCCCAGTTTTTGGTCGACGAGCGAGGCGGCCGCCTCCGAGAGGTAGCCCTGGTTGGGCACGAGGCAGCCCCGCCCGAAGCAGCAGGGGCAGCACACCTTGTGGAAGTATTTGGTCCATTTTGGGTTGAGATGGCCGTACGGCTCCTCTGATTTTGGTTTGAACACACCGATGATTTTCCCTTTGGGGTCTTTAACAAAGTAGCTCCCGCTGGAGCCCTGCGAGATCCTCTCTGGACACACTCCGCTCTCAATGGCCTGCTCCGCCCGCTGCACTATCTCTGCAAACATGGGGTCCTCCGGGAAATGGTTAAAATCACCACTGCTGttacctacaaacacacacacacacacacacacacacaaaatatataaaaatataaataaaacacaacaagcaGTCTCACAATGATAAACtgcagcatgcaaacagtgtgccGTCAGTCATGGAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247215 lncRNA upstream 31535 4376381 ~ 4392378 (+) True G182592
TU247162 lncRNA upstream 265111 4158360 ~ 4158802 (+) True G182566
TU247164 lncRNA upstream 265111 4158360 ~ 4158802 (+) False G182566
TU247165 lncRNA upstream 265111 4158360 ~ 4158802 (+) False G182566
TU247122 lncRNA upstream 506297 3909903 ~ 3917616 (+) True G182530
TU247213 lncRNA downstream 4607 4436553 ~ 4437168 (+) True G182591
TU247220 lncRNA downstream 6038 4437984 ~ 4442647 (+) True G182597
TU247224 lncRNA downstream 16735 4448681 ~ 4453032 (+) True G182600
TU247233 lncRNA downstream 46355 4478301 ~ 4480987 (+) True G182603
TU247237 lncRNA downstream 46355 4478301 ~ 4506708 (+) False G182603
XM_022682131.1 mRNA upstream 875 4395815 ~ 4423038 (+) True sclt1
XM_022681680.1 mRNA upstream 596148 3815403 ~ 3827765 (+) True pcdh18
XM_007232786.3 mRNA upstream 873388 3536363 ~ 3550525 (+) True LOC103037959
XM_007232787.3 mRNA upstream 873388 3540843 ~ 3550525 (+) False LOC103037959
XM_022681679.1 mRNA upstream 888861 3524196 ~ 3535052 (+) True LOC103037633
XM_022681687.1 mRNA downstream 42787 4474733 ~ 4479749 (+) True LOC103036009
XM_007238222.3 mRNA downstream 66091 4498037 ~ 4506712 (+) True LOC103036626
XM_022681691.1 mRNA downstream 503637 4935583 ~ 4941130 (+) False LOC103029349
XM_022681690.1 mRNA downstream 503638 4935584 ~ 4941134 (+) True LOC103029349
XM_007239677.2 mRNA downstream 510475 4942421 ~ 4948100 (+) True LOC103029042
TU246914 other upstream 1133655 3287938 ~ 3290258 (+) True G182361
TU246909 other upstream 1165063 3256367 ~ 3258850 (+) True G182356
TU246773 other upstream 1854619 2525769 ~ 2569294 (+) True LOC111195173
TU246772 other upstream 1963591 2458294 ~ 2460322 (+) False LOC103029952
TU246236 other upstream 4031783 391614 ~ 392130 (+) True G181818
TU247365 other downstream 503662 4935608 ~ 4941130 (+) False LOC103029349
trnai-aau_13 other downstream 743890 5175836 ~ 5175908 (+) True trnai-aau_13
trnai-aau_14 other downstream 774140 5206086 ~ 5206159 (+) True trnai-aau_14
TU247511 other downstream 994921 5426867 ~ 5427255 (+) True G182790
trnap-agg_6 other downstream 1413485 5845431 ~ 5845502 (+) True trnap-agg_6

Expression Profile