RNA id: XM_022681690.1


Basic Information

Item Value
RNA id XM_022681690.1
length 1073
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC103029349
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4935583 ~ 4941134 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTAGAGGACAGTACCGGTGCTCACCTTCAGCAGTGAGGTGATGGTGTCTGACAGCAGCGCAGTGTGTCTGTTCTGCTTCTCTGTCTGTGTTTAGAGGAGAAACAGAGTTCAGACATGAATCCATCATCTTCCTCAGACCACAGAGGATCAGAATCACCCGGAGAGACCCCCGTGTTCCTCTCAGAGCGAGAACCGGGCTCTACTGGAGCTCAGCGTCTTCCGTGTggtGTCGAATGGAGGACATACACACCCACAGAGGAAGAGAATAAGATCTTCAGGGAGTGCGGTTCAGAGAGCTTCTTTAGTAGatCTTTGCCCATGGCATTATTAGGCCTGATTATCATACCGATCATCTTCCCCAAAGGATCCCGGTTTGCATCCTCACGAGTTGGATTAGTGCCAGAAATAATGCttttTGGTGCAGTGAGCTACATTGTGGGACAGTACTCCTACTTGAATGCCTGTAAGGAGAAGTTTATGAATTTGAGGGATTCACCGATTGGAAAATCTTTAAGGCAGCCGCATacctttTTACTTGGTCAGTCGGTGCTGAATAAGAATGAGCCCCAGCCTGAGAGTGTGTTCCAGTCCAACACTCGGACAAAAAGCCAGAATACACAATCCTCAGACCGCCCTCCCTCAAAGGtgaAGAAGAACAAGTATGGAGATTCATGGGAGGAGTGAACAGAGATCTACAGTCAGTACAGAGTGTTAATGCTGTTACTGAACGACAAAAGTATCGGGACATGTTCTAATTTCTTGCTTCTGTTTAAATCAAGGCTTTTAAAAAGAGTTCATCCTGATCTTGCTTTTGATAAAgcaactgtttctactgtccagaaaTCCCAAGGCTTTCTACTACATTTTGAAGTGTCACTGTTATGTCCTGGATGTATCACCAAGGAAtacacaagctgtgtgtgcatttacacatctatattagcaatgggtgcaacttttAAGTAGCTGAAGGAATTCATTGGAAGGGGGTTggattttgagtgtgtgtgtgtgtagccttTTTTGGATCTGTGTTTCTgagttcaaaataaaagttggtTAATGCTTCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247348 lncRNA upstream 46241 4885736 ~ 4889343 (+) True G182690
TU247323 lncRNA upstream 83523 4851503 ~ 4852061 (+) True G182674
TU247322 lncRNA upstream 84141 4850587 ~ 4851443 (+) True G182673
TU247245 lncRNA upstream 420725 4514287 ~ 4514859 (+) True G182607
TU247244 lncRNA upstream 421369 4513753 ~ 4514215 (+) True G182606
TU247370 lncRNA downstream 25877 4967011 ~ 4969678 (+) True G182703
TU247421 lncRNA downstream 95076 5036210 ~ 5037608 (+) True G182730
TU247453 lncRNA downstream 341214 5282348 ~ 5339331 (+) True G182752
TU247512 lncRNA downstream 486215 5427349 ~ 5427850 (+) True G182791
TU247694 lncRNA downstream 552708 5493842 ~ 5498366 (+) True G182907
XM_007238222.3 mRNA upstream 428872 4498037 ~ 4506712 (+) True LOC103036626
XM_022681687.1 mRNA upstream 455835 4474733 ~ 4479749 (+) True LOC103036009
XM_022682131.1 mRNA upstream 512546 4395815 ~ 4423038 (+) True sclt1
XM_022681680.1 mRNA upstream 1107819 3815403 ~ 3827765 (+) True pcdh18
XM_007232787.3 mRNA upstream 1385059 3540843 ~ 3550525 (+) False LOC103037959
XM_007239677.2 mRNA downstream 1287 4942421 ~ 4948100 (+) True LOC103029042
XM_022681696.1 mRNA downstream 29970 4971104 ~ 4981396 (+) True LOC103030219
XM_015603191.2 mRNA downstream 54643 4995777 ~ 5031681 (+) True LOC103028516
XM_022681700.1 mRNA downstream 54643 4995777 ~ 5031681 (+) False LOC103028516
XM_022681701.1 mRNA downstream 139264 5080398 ~ 5105339 (+) True LOC103028729
TU247191 other upstream 503638 4423913 ~ 4431946 (+) True G182577
TU246914 other upstream 1645326 3287938 ~ 3290258 (+) True G182361
TU246909 other upstream 1676734 3256367 ~ 3258850 (+) True G182356
TU246773 other upstream 2366290 2525769 ~ 2569294 (+) True LOC111195173
TU246772 other upstream 2475262 2458294 ~ 2460322 (+) False LOC103029952
trnai-aau_13 other downstream 234702 5175836 ~ 5175908 (+) True trnai-aau_13
trnai-aau_14 other downstream 264952 5206086 ~ 5206159 (+) True trnai-aau_14
TU247511 other downstream 485733 5426867 ~ 5427255 (+) True G182790
trnap-agg_6 other downstream 904297 5845431 ~ 5845502 (+) True trnap-agg_6
TU247815 other downstream 1101554 6042688 ~ 6048474 (+) True G183001

Expression Profile