RNA id: TU247941


Basic Information

Item Value
RNA id TU247941
length 2015
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC103036850
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6523213 ~ 6664763 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATCGCTCACAGGACACCACCCAGAGAGTGCTAATGGTGGGCTGTTCTCAGtctagcagtgacactgaggtgtttaaaaactccagctttGTCTGATACACTCGTTTGTACccgcacaacacacacactaacacacttgtTTGGAAATACCCTGATCTTTTTATATCAATCAAAAACTAGAAAAGCAGGAAATGAAGCACATTTACCTGCTAAGCCACACCCAGCTGGGATGAAGCCCAAGCAATGTGAAACCACTGCTGCTGTTCTGCCTCCAGGATCACATGAttgtttggtttagtgttgtttATTTGCCAGACAGGAAAACACACAGGTCACTGAGTGGTGTCCATCTTGTGTGATTTGGGCTCCATCAACATGTCTGGCAGGCTACAATCCCTGGTAAATGATTTAACTGAGAAAAGTCATGAACTCAGCTCTGGTCCACCAGCACTGCGGCgtctacacacacaaaaatttACTCTAGATGAGTGTGACAAAATCAGAAGGTGGACATTTGGACAGAAACATCCtaccaaactaaacaaaacaatcCTGCTGGTGGGAGAAACTGGAACAGGCAAGACCACTCTGATCAACACCATGGTCAACTACTATCTGGGGGTGAAGATTGAGCATAATGTGTGGTTTGAGATCACAGAAGAACAAAAGACAGGTCAAACTGAATCTAAAACATCTGAGATCACTGTGTATGAGATCTTCTCTGAACAGaaatccttctctctctccataatCGACACTCCAGGATATGGAGACACCAGGGGAATGGAAAAGGACATGGAAAATTCCTCAGAATCTGCATAGACTGTTTCTACATGATACTGGAGTGAAGAGTCTGGATGCTGTGTGTCTTGTATTGAAAGCATCTCAGAACAGAATCTCAGAGATTCAGCGCTACATCCTTTGACGCAATTCTCTCCTTATTCGGTAAAGACATAGGCGAGAACGTAGTCCTTTTTATTACATACTCAGATGGAGGTCCTCCAAAAGATGTTCTGGAAGCTGTTGAGAAAGAAAAGATCCCTTGCTGTCGTGATGCTGAGAACGAACCTGTTCACTTCCTGTTCAACAACCGTCAGCCTGAGAAACACACAGCCAAATATCAGCGTGTGTTCAAATCATCTTGGGAAATGGGGGAAAGCAGTCTGGAGGAGTTTTTTGAATTCCTGAAATTACAGCAGAGTAAAAGCTTAACTCTGACTCTCAGCGTTCTGAGGGAGCGCATGCAGCTTGAGGCCTGTGTTCAGAGTTTGAAGGAACACATTAAGTTCACTGAGCAAAAATTGATTGAACTGACTATGATTCAGCTAGCGCTGCAAATGTACAAAGAAAAGATTATGATGGATGAAAATTTTCCTTTCTCTATCAAGAAAGTTTACAAAAAGAAGGTGCCCATCACTCGAGGCTTATGGTTCAATCGCAAAGTGACAGCCTGCAGCGAGTGTCAGGAGAACTGCCATCTCTATTGCATCATGATTGCCAATAGTGCCAGGAGCTGTGAGGTAATGAAGAAAGATTACTGCACCGCGTGTGGGTGTTACACCTCCAAACATGTCAGAGAGGGCAAGAAATACAAAACTTTTGAAAAAAACGAAACAGTCACATTTGCAGACCTGAAGAGGACGTtgcatactgaaaaaaaaaatgttacatatgACAGCGAGAAATACCAACATGTGGTCACAAAGCACCAAGAAAAGCTGAGCAAGAAAGAAGAAATGACCAACGTGGAAAGAAGCCTGAAAGTGCTCCTGGATGAGAAtgaaaaacaacagaggaactcAGTGAAAAATGCCTACCAGGCAATCATCAAACTGTGTGACTGTGCACTAAAACCAGACTCCGCCTTCACCCTTCGACATCTAGACTTCTTGATTCCCCGACTTGAAAAAGCTGGAGAATTGGAGTCCGCTCAGAGGCTGAAGGGCATGCAGAATCACCTGCCCCAGGAATCATCCTACTCTGTGCTGGGTTATTTCAGCAGGCTGAAAgttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651518.1 lncRNA upstream 107296 6539479 ~ 6550909 (+) True LOC111195198
TU247957 lncRNA upstream 127824 6529941 ~ 6530381 (+) True G183099
TU247955 lncRNA upstream 147141 6509311 ~ 6511064 (+) True G183097
TU247932 lncRNA upstream 160199 6478227 ~ 6498006 (+) True G183086
TU247925 lncRNA upstream 241468 6416342 ~ 6416737 (+) True G183081
TU248098 lncRNA downstream 340926 7005689 ~ 7009923 (+) True LOC103028013
TU248108 lncRNA downstream 422197 7086960 ~ 7088091 (+) True G183199
TU248112 lncRNA downstream 429946 7094709 ~ 7095233 (+) False G183201
TU248113 lncRNA downstream 429946 7094709 ~ 7095233 (+) True G183201
TU248118 lncRNA downstream 429946 7094709 ~ 7095233 (+) False G183201
XM_022682139.1 mRNA upstream 15810 6640547 ~ 6642395 (+) True LOC111195266
XM_022681754.1 mRNA upstream 39492 6610589 ~ 6618713 (+) True LOC111195195
XM_022682138.1 mRNA upstream 93878 6551253 ~ 6564327 (+) True LOC111195264
XM_022681751.1 mRNA upstream 122066 6523213 ~ 6536139 (+) True LOC103036850
XM_022681752.1 mRNA upstream 163718 6445269 ~ 6494487 (+) True rnf38
XM_022681757.1 mRNA downstream 40114 6704877 ~ 6732876 (+) False LOC103027465
XM_022681756.1 mRNA downstream 40115 6704878 ~ 6732876 (+) True LOC103027465
XM_022681758.1 mRNA downstream 107808 6772571 ~ 6813525 (+) True LOC103022127
XM_022681760.1 mRNA downstream 186459 6851222 ~ 6878321 (+) True LOC103031277
XM_022681759.1 mRNA downstream 232717 6897480 ~ 7007022 (+) False LOC103028013
TU247952 other upstream 105825 6523345 ~ 6552380 (+) False LOC103036850
TU247933 other upstream 160013 6493662 ~ 6498192 (+) False rnf38
TU247815 other upstream 609731 6042688 ~ 6048474 (+) True G183001
trnap-agg_6 other upstream 812703 5845431 ~ 5845502 (+) True trnap-agg_6
TU247511 other upstream 1230950 5426867 ~ 5427255 (+) True G182790
TU248136 other downstream 549708 7214471 ~ 7217139 (+) True G183215
TU248389 other downstream 2206124 8870887 ~ 8912626 (+) False tll1
TU248439 other downstream 2615941 9280704 ~ 9282934 (+) True G183387
XR_002651521.1 other downstream 3174173 9838936 ~ 9844659 (+) True LOC111195202
XR_002651522.1 other downstream 3174173 9838936 ~ 9844659 (+) False LOC111195202

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067082 True 1743 mRNA 0.42 3 NC_007118.7 3687439 ~ 3693303 (-)