RNA id: TU248440


Basic Information

Item Value
RNA id TU248440
length 506
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G183387
representative False

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 9211334 ~ 9293703 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCAAGCTTGAACCACGAAACTTCACAAGATGATAGAACCTATTGCCGCGGGGTGTGCTTGTGCTTTTCTAAGTGATCGGACCACCAGGGTCCGATTGGTGGTCCGCCAAAGTCAGATTTTTTCCCATAGACTTCCATTCACACTTTTTTCAAACGGCTCTAAAAGTCACAATTTTTGAGCTAGAACCACGAAATTCACAAGACATACAGAACTTGCAGAGACGTTTCAGACGATATGCTGATCTCACCGATACGATTTACGGTTTTCGTAAAATTATCGTACGAACTttccccataggaatgaatgggcgGAATGTTGgccatctcacacacaccagcCGATCCTGCGCACGGCCCCCCTCTCTGCCCTGCTCCTCAGTACTGTATCTGTATGGAGAAGATACTGCTGAACACAACCCACACCAGAACCaataccacactacacacacacaccacacaccacacatacaccacaccacacacacttcaaaccacacataccccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248417 lncRNA upstream 23514 9180940 ~ 9187820 (+) True G183376
TU248418 lncRNA upstream 23514 9180940 ~ 9187820 (+) False G183376
TU248387 lncRNA upstream 171585 9013751 ~ 9039749 (+) True G183361
TU248384 lncRNA upstream 183354 9013751 ~ 9027980 (+) False G183361
TU248385 lncRNA upstream 194808 9000855 ~ 9016526 (+) False G183361
TU248457 lncRNA downstream 14610 9305395 ~ 9306685 (+) True G183391
TU248474 lncRNA downstream 269925 9560710 ~ 9932597 (+) False G183405
TU248475 lncRNA downstream 269925 9560710 ~ 9932597 (+) False G183405
TU248476 lncRNA downstream 269925 9560710 ~ 9932597 (+) True G183405
TU248478 lncRNA downstream 277387 9568172 ~ 9570981 (+) True G183406
XM_022681786.1 mRNA upstream 27295 9090283 ~ 9184039 (+) True ugt8
XM_022681783.1 mRNA upstream 227365 8870837 ~ 8983969 (+) True tll1
XM_022681782.1 mRNA upstream 364920 8801144 ~ 8846414 (+) True cpe
XM_022681781.1 mRNA upstream 417427 8784880 ~ 8793907 (+) True msmo1
XM_022681779.1 mRNA upstream 432391 8752127 ~ 8778943 (+) True klhl2
XM_022681787.1 mRNA downstream 177789 9468574 ~ 9650975 (+) True LOC103047154
XM_022681790.1 mRNA downstream 548151 9838936 ~ 9844132 (+) False LOC111195202
XM_022681791.1 mRNA downstream 548151 9838936 ~ 9842445 (+) False LOC111195202
XM_022681793.1 mRNA downstream 565027 9855812 ~ 9865765 (+) True LOC111195203
XM_022681792.1 mRNA downstream 565027 9855812 ~ 9865765 (+) False LOC111195203
TU248389 other upstream 298708 8870887 ~ 8912626 (+) False tll1
TU248136 other upstream 1994195 7214471 ~ 7217139 (+) True G183215
TU247941 other upstream 2546571 6658205 ~ 6664763 (+) False LOC103036850
TU247952 other upstream 2658954 6523345 ~ 6552380 (+) False LOC103036850
TU247933 other upstream 2713142 6493662 ~ 6498192 (+) False rnf38
XR_002651521.1 other downstream 548151 9838936 ~ 9844659 (+) True LOC111195202
XR_002651522.1 other downstream 548151 9838936 ~ 9844659 (+) False LOC111195202
TU248824 other downstream 807796 10098581 ~ 10101547 (+) False LOC111195207
TU248825 other downstream 807796 10098581 ~ 10101547 (+) False LOC111195207
TU248833 other downstream 819081 10109866 ~ 10110741 (+) True G183671

Expression Profile