RNA id: TU248501


Basic Information

Item Value
RNA id TU248501
length 659
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G183426
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 9676091 ~ 9677003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatctatctatatgtctatgtcattatcagtacagtgatagcGGCACTCAGAGCTGAAGCACGCATtatatgcagagtctatgtatatatataaatatctatctatctatctatctatctgaagctagcattatgggatgtaaacagtgtttttttaataagcttcttgtgcactttttaagttattaatgcctcattttaaatgtcagggctctccagattctagcaaggaagtgtggagctactttagggtaaggtaagtacttttatcatgtttttactacaacaaaagtccattttacaccggagttctcctttaaagaaaACCATAGAAAACACGTTGAAGGAGCAGATAAAAGCTAAAGGTAGCTAGCAATTAGCATTATTACACAAATTACATATTTGTATTACATATAATACAACTGGTTGCTATGAGCTTCAATTTGTTGACAGTATAGAACACTTGGTCAAAAGGTATTCCtttaagaaacaaacaaaaaaaactttttttggtaggcctgtcacaatgaCCATTTTGTATtaacaatactgtatattgtcccaaaaattCTTGAAATATGCAATATTATTGATAATCATCATTCTTGGAAAGTTTGGGTAAATTTGTCCTAAAACTTTTTTAGATTTatcagattttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248462 lncRNA upstream 18489 9654267 ~ 9657602 (+) True G183395
TU248486 lncRNA upstream 94715 9581073 ~ 9581376 (+) True G183412
TU248478 lncRNA upstream 105110 9568172 ~ 9570981 (+) True G183406
TU248457 lncRNA upstream 369406 9305395 ~ 9306685 (+) True G183391
TU248451 lncRNA upstream 387949 9287251 ~ 9288142 (+) False G183389
TU248521 lncRNA downstream 81815 9758818 ~ 9769351 (+) True G183437
TU248535 lncRNA downstream 168000 9845003 ~ 9852352 (+) True G183448
TU248548 lncRNA downstream 213777 9890780 ~ 9899728 (+) False G183461
TU248551 lncRNA downstream 213777 9890780 ~ 9899728 (+) False G183461
TU248550 lncRNA downstream 221840 9898843 ~ 9899728 (+) True G183461
XM_022681787.1 mRNA upstream 25116 9468574 ~ 9650975 (+) True LOC103047154
XM_022681786.1 mRNA upstream 492052 9090283 ~ 9184039 (+) True ugt8
XM_022681783.1 mRNA upstream 692122 8870837 ~ 8983969 (+) True tll1
XM_022681782.1 mRNA upstream 829677 8801144 ~ 8846414 (+) True cpe
XM_022681781.1 mRNA upstream 882184 8784880 ~ 8793907 (+) True msmo1
XM_022681790.1 mRNA downstream 161933 9838936 ~ 9844132 (+) False LOC111195202
XM_022681791.1 mRNA downstream 161933 9838936 ~ 9842445 (+) False LOC111195202
XM_022681793.1 mRNA downstream 178809 9855812 ~ 9865765 (+) True LOC111195203
XM_022681792.1 mRNA downstream 178809 9855812 ~ 9865765 (+) False LOC111195203
XM_022681795.1 mRNA downstream 179410 9856413 ~ 9865765 (+) False LOC111195203
TU248439 other upstream 393157 9280704 ~ 9282934 (+) True G183387
TU248389 other upstream 763465 8870887 ~ 8912626 (+) False tll1
TU248136 other upstream 2458952 7214471 ~ 7217139 (+) True G183215
TU247941 other upstream 3011328 6658205 ~ 6664763 (+) False LOC103036850
TU247952 other upstream 3123711 6523345 ~ 6552380 (+) False LOC103036850
XR_002651521.1 other downstream 161933 9838936 ~ 9844659 (+) True LOC111195202
XR_002651522.1 other downstream 161933 9838936 ~ 9844659 (+) False LOC111195202
TU248824 other downstream 421578 10098581 ~ 10101547 (+) False LOC111195207
TU248825 other downstream 421578 10098581 ~ 10101547 (+) False LOC111195207
TU248833 other downstream 432863 10109866 ~ 10110741 (+) True G183671

Expression Profile