RNA id: TU248535


Basic Information

Item Value
RNA id TU248535
length 869
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G183448
representative True

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 9845003 ~ 9852352 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGAGGTCCGGTTAGAGGGAGACAAAAAGTCTGAAGACAGAACCTGACgttcaattattttattagacacaattataaaatagctatacaaaaataaacctCCTATATATGaccaatataaaaatagacttatttaaaaagtactCAGCCCATGTAGTTCATTCATTCACATAGAAGGGTAACAGGTTACTTAAAAACTACACACTGTGAAATAAACCCACTCTAGTACAGACTCACACGTGTCAATCACTAATATTACACGATCAGAGAAGCACCGTTAATTAATTCACATAGAAATGTAACGGGTTACTTAGAAACTACACACTGTGAAATAAACCCACTCTAGTACAAACTCACACGTATCTTTCATCAAATAActcactaataccacacaatcAGAGAAGCACAGCAATCGTACCTAGTTTATCCTCAGAATAAATAACACACGGCTGAAGAGCTAAAAAGACATACGCATAAACACACGAGAAACTACAATAACTAGACCAGTCAGAATGATCCTAAAATAATAGTGAGTTAGAGTAACAATGGCCAGAGCTCAAAcaggagtaagagagagagagatagagagggagtgaTAAACACTTGCGTTCAGATGCGATAGATACAGAGTCCGGAGCGCACACTCGCTGTAGTTCATCAAAGTCCCATAAAAGTTCAGTCTTCTCCTTGGTTCACGCCGAGGCAAACAGAGTTCAGCGCACTCTCCCAGAGCACGCCACACCAGCGTCTCATCCGGCAGCACGCGCTTCCTCTCGCGTCTACCTGGCCGTGCCCCCCCCTGAGGACCCCTTAGGTGTTCCTTATATTGCCAGTATTTTTCAACACGTGTTCACTCATTTCCCCGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248521 lncRNA upstream 75652 9758818 ~ 9769351 (+) True G183437
TU248501 lncRNA upstream 168000 9676091 ~ 9677003 (+) True G183426
TU248462 lncRNA upstream 187401 9654267 ~ 9657602 (+) True G183395
TU248486 lncRNA upstream 263627 9581073 ~ 9581376 (+) True G183412
TU248478 lncRNA upstream 274022 9568172 ~ 9570981 (+) True G183406
TU248548 lncRNA downstream 38428 9890780 ~ 9899728 (+) False G183461
TU248551 lncRNA downstream 38428 9890780 ~ 9899728 (+) False G183461
TU248550 lncRNA downstream 46491 9898843 ~ 9899728 (+) True G183461
TU248553 lncRNA downstream 46491 9898843 ~ 9899728 (+) False G183461
TU248563 lncRNA downstream 54765 9907117 ~ 9916732 (+) True G183468
XM_022681790.1 mRNA upstream 871 9838936 ~ 9844132 (+) False LOC111195202
XM_022681791.1 mRNA upstream 2558 9838936 ~ 9842445 (+) False LOC111195202
XM_022681787.1 mRNA upstream 194028 9468574 ~ 9650975 (+) True LOC103047154
XM_022681786.1 mRNA upstream 660964 9090283 ~ 9184039 (+) True ugt8
XM_022681783.1 mRNA upstream 861034 8870837 ~ 8983969 (+) True tll1
XM_022681793.1 mRNA downstream 3460 9855812 ~ 9865765 (+) True LOC111195203
XM_022681792.1 mRNA downstream 3460 9855812 ~ 9865765 (+) False LOC111195203
XM_022681795.1 mRNA downstream 4061 9856413 ~ 9865765 (+) False LOC111195203
XM_022681794.1 mRNA downstream 4167 9856519 ~ 9865765 (+) False LOC111195203
XM_022682146.1 mRNA downstream 132260 9984612 ~ 9985691 (+) True LOC111195273
XR_002651521.1 other upstream 344 9838936 ~ 9844659 (+) True LOC111195202
XR_002651522.1 other upstream 344 9838936 ~ 9844659 (+) False LOC111195202
TU248439 other upstream 562069 9280704 ~ 9282934 (+) True G183387
TU248389 other upstream 932377 8870887 ~ 8912626 (+) False tll1
TU248136 other upstream 2627864 7214471 ~ 7217139 (+) True G183215
TU248824 other downstream 246229 10098581 ~ 10101547 (+) False LOC111195207
TU248825 other downstream 246229 10098581 ~ 10101547 (+) False LOC111195207
TU248833 other downstream 257514 10109866 ~ 10110741 (+) True G183671
TU248834 other downstream 257514 10109866 ~ 10110648 (+) False G183671
TU248844 other downstream 293146 10145498 ~ 10171103 (+) False LOC111195212

Expression Profile